PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00910.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 241aa    MW: 26694.9 Da    PI: 10.1161
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00910.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.72.6e-051762082355
                                   SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                    yp++e++ +LA+ +gL+++q+ + F N+R ++
  Zmw_sc00910.1.g00010.1.am.mk 176 AYPTEEDKVRLASITGLDTKQINNRFINQRKRH 208
                                   6*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.042148211IPR001356Homeobox domain
SMARTSM003891.4E-8150215IPR001356Homeobox domain
SuperFamilySSF466893.55E-16150219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-23153213IPR009057Homeodomain-like
CDDcd000866.10E-8160212No hitNo description
PfamPF059205.6E-13168207IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
GTGRRFQPVH HAGHKDQTEY LDSSRNEYLE EDGEPREGRG AGLADGSGEA AGGEVRRRAD  60
VALLLAPVHG GGVPAAAATA TTVDDDAHAG LRMHRSLARA RVCFVNAPGG LRPRRDEAEA  120
ARQGEQFVEP STAALFFSSE FLKKRKMERK KRKKGKLPKD ARLVLLDWWN THYRWAYPTE  180
EDKVRLASIT GLDTKQINNR FINQRKRHWK PSEDMRFALM EGVAGSSSGT TLYFDAGTIG  240
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153KKRKK