PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00912.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 207aa MW: 23002.5 Da PI: 8.9702

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00912.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	67.4	2.2e-21	30	91	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYG K++++++fpr YYrCt++ +Cp++k+v+++ ++d+ + +tY +eH ++ Zmw_sc00912.1.g00250.1.sm.mkhc 30 NDGHQWRKYGEKKINNTNFPRYYYRCTYKdnmNCPATKQVQQKdSSDTPLYAVTYYNEHSCN 91 8*************************99999***875167999********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-23	16	91	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-22	22	91	IPR003657	WRKY domain
PROSITE profile	PS50811	16.513	24	93	IPR003657	WRKY domain
SMART	SM00774	2.7E-31	29	92	IPR003657	WRKY domain
Pfam	PF03106	1.5E-24	30	90	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSPAPSSHQP HTNSRKEKRV RQVDTFAPHN DGHQWRKYGE KKINNTNFPR YYYRCTYKDN 60 MNCPATKQVQ QKDSSDTPLY AVTYYNEHSC NSAYLSLSPS EFQLQTSSGK AISICFDSSA 120 APQEPVASAC SPSSSAATPA AMRRGTPPET KRPPAPVLRR SETYPWGAGA VEQRPPASCG 180 TERHGAAVPE EVVDAGRFGE IRFFHFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-13	17	89	2	75	Disease resistance protein RRS1
5w3x_D	1e-13	17	89	2	75	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792602.1	1e-111	probable WRKY transcription factor 35
TrEMBL	A0A3L6SG44	1e-110	A0A3L6SG44_PANMI; Putative WRKY transcription factor 35
STRING	Pavir.Ib01500.1.p	1e-109	(Panicum virgatum)
STRING	Si039519m	1e-109	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2032	35	100