PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00927.1.g00380.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 149aa    MW: 15722.8 Da    PI: 10.7286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00927.1.g00380.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-054264123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C+++F++   L rH  +H
  Zmw_sc00927.1.g00380.1.sm.mk 42 FECKTCSRRFPSFQALGRHRASH 64
                                  89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-840108No hitNo description
PfamPF139121.6E-114166IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.9264269IPR007087Zinc finger, C2H2
SMARTSM003550.0374264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139129.8E-1085110IPR007087Zinc finger, C2H2
PROSITE profilePS501578.72586108IPR007087Zinc finger, C2H2
SMARTSM003552.186108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MERLTFGQEE PEASIVSVAQ EVMLLLARAG GGGEPSAAPR VFECKTCSRR FPSFQALGRH  60
RASHKRPRPQ GTAAARTAEP AKARAHGCTV CGVEFSLGQA LGGHMRRHRA VAVEGASARG  120
LPEGEAERKA DQAQGSRKLG PKPCSTPSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15867RHRASHKRPR
26468KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795407.14e-53zinc finger protein ZAT12-like
TrEMBLA0A2T7BZ269e-53A0A2T7BZ26_9POAL; Uncharacterized protein
STRINGPavir.Ia00294.1.p1e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157