PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00929.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 161aa MW: 17650.7 Da PI: 4.4788

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00929.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	48.2	2.6e-15	35	128	6	92
NF-YB 6 rflPianvsrimkkvlP.......anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfe 77 ++lP a v r++k l a+ + +da e + fi ++++ a+d c++ kr+tin+dd+l al ++ f Zmw_sc00929.1.g00110.1.sm.mkhc 35 EELPKAIVRRLVKDKLAhiaggegAEVIVNRDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFS 113 6799999999999988622222112345789********************************************** PP NF-YB 78 dyveplkvylkkyre 92 ++veplk+ l+ r Zmw_sc00929.1.g00110.1.sm.mkhc 114 EFVEPLKTSLQDKRS 128 *******998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.0E-31	31	151	IPR009072	Histone-fold
Pfam	PF00808	1.0E-9	36	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.51E-25	37	149	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MADEATNESE PQPQAAGTQD KPAPAAAPMT EAEVEELPKA IVRRLVKDKL AHIAGGEGAE 60 VIVNRDAMAA FAESARIFIH YLSATANDMC KESKRQTINA DDVLKALDEM EFSEFVEPLK 120 TSLQDKRSEA SKKQKEKRRK LNEEALPEKG NDPVDDAENG D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801207.1	3e-78	DNA polymerase epsilon subunit 3
TrEMBL	A0A0A9GDS4	8e-79	A0A0A9GDS4_ARUDO; Uncharacterized protein
STRING	Pavir.Bb01701.1.p	9e-73	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44