PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00961.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 430aa    MW: 47211.3 Da    PI: 9.949
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00961.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.5e-511392731128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                   lppGfrFhP+d+elv++yL++k++gk    +     + +v+++k+ePwdLp +v  + +ewyfFs +d+kyatg+r+nrat
  Zmw_sc00961.1.g00150.1.am.mk 139 LPPGFRFHPRDDELVMDYLCRKLSGKGgggVYGGINMIDVNLNKCEPWDLPDEVCVGGREWYFFSLHDRKYATGQRTNRAT 219
                                   79************************987644434588999**********8888899*********************** PP

                           NAM  79 ksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +sgyWkatgkd+++ ++    +g++vg++ktLvfy+grap+g+ktdWvmhe+r+
  Zmw_sc00961.1.g00150.1.am.mk 220 RSGYWKATGKDRPISRRsgsgSGAVVGMRKTLVFYHGRAPRGSKTDWVMHEFRV 273
                                   ***************9988877788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-56128304IPR003441NAC domain
PROSITE profilePS5100554.705139304IPR003441NAC domain
PfamPF023651.1E-25140273IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MYLENGALIS SVGVRCTYND VFFGPIDSPA GRKETPKPPV RRFHTEFGRL KQPTLQQQQQ  60
QHQASAHRRP AEMRRSWREA CAAISDQSSV TATATRRWWL GGAVPSLTQS SQRVSLLKPR  120
KKKKRARAMS SISLMETRLP PGFRFHPRDD ELVMDYLCRK LSGKGGGGVY GGINMIDVNL  180
NKCEPWDLPD EVCVGGREWY FFSLHDRKYA TGQRTNRATR SGYWKATGKD RPISRRSGSG  240
SGAVVGMRKT LVFYHGRAPR GSKTDWVMHE FRVEGPAVAD AGGVAGRPGS TLKEDWVLCR  300
VFYRGRTATA RPAATADVEA EAGSLPNELI SLPMPYAPPA DAYLLALDHA PAATIGGFYY  360
QQDDDADGGL AATQAKSLSS FRELLTGMVE RDGGAAAKVE LHQDWTEAAY AAGQQSAAPA  420
QTWNPFLNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-4713430815172NAC domain-containing protein 19
3swm_B1e-4713430815172NAC domain-containing protein 19
3swm_C1e-4713430815172NAC domain-containing protein 19
3swm_D1e-4713430815172NAC domain-containing protein 19
3swp_A1e-4713430815172NAC domain-containing protein 19
3swp_B1e-4713430815172NAC domain-containing protein 19
3swp_C1e-4713430815172NAC domain-containing protein 19
3swp_D1e-4713430815172NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124RKKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824710.11e-134NAC domain-containing protein 21/22-like
TrEMBLA0A2S3IAF01e-132A0A2S3IAF0_9POAL; Uncharacterized protein
STRINGSi010680m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138