PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00964.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 110aa    MW: 12666.9 Da    PI: 11.476
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00964.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.8e-25959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  k+ien + rqvt skRr+g++KKA+EL vLCda+v v++fsstg+ly+y s
  Zmw_sc00964.1.g00040.1.sm.mk  9 KKIENITSRQVTSSKRRTGLFKKAKELAVLCDAQVGVLVFSSTGRLYDYTS 59
                                  68***********************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.754161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-33160IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-24323IPR002100Transcription factor, MADS-box
CDDcd002659.45E-32362No hitNo description
SuperFamilySSF554554.19E-26380IPR002100Transcription factor, MADS-box
PfamPF003199.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVRGKTVMKK IENITSRQVT SSKRRTGLFK KAKELAVLCD AQVGVLVFSS TGRLYDYTST  60
SFGKQRQQLH NLQESNRYRN TRVNVMHREV LLPSIALLVQ KMMMTKFILS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656060.11e-29PREDICTED: MADS-box transcription factor 23-like
RefseqXP_015641670.19e-30MADS-box transcription factor 23-like
SwissprotQ6EP492e-28MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0P0WWA72e-29A0A0P0WWA7_ORYSJ; Os06g0347700 protein
STRINGOS06T0347700-003e-30(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]