PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00964.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 150aa    MW: 16351.2 Da    PI: 10.4772
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00964.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.83e-2399148151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien+ nrqvt skRr+g++KKA+EL +LCda++ vi+f +tg+ly++s+
  Zmw_sc00964.1.g00070.1.am.mk  99 KRIENEANRQVT-SKRRAGVFKKAKELATLCDAQIGVIVFTNTGQLYDFSN 148
                                   79**********.************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.40891150IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-2991149IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-1493113IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-2093149IPR002100Transcription factor, MADS-box
PfamPF003193.2E-20100146IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-14127148IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MGRVAIGLWA VSCPRPPFGL CFWPAGLITA DVVFDLLSPS RVIQTASLSL SLSLSLSLSL  60
SLSLWVLSPP LSFLSPVRKP AGDQCPDSRL MVRGKTVLKR IENEANRQVT SKRRAGVFKK  120
AKELATLCDA QIGVIVFTNT GQLYDFSNSW
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3566134