PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00964.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 123aa MW: 13689.2 Da PI: 10.4823

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00964.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.5	1.3e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvtfskRr+g++KKA+ LS+LCda++ vi+f +tg+ly++ss Zmw_sc00964.1.g00090.1.sm.mk 9 KRIENEANRQVTFSKRRAGMFKKAKGLSILCDAQIGVIVFTNTGQLYDFSS 59 79***********************************************96 PP
2	SRF-TF	54.8	1.2e-17	57	95	13	51
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 fs r+g++KKA+ELS+LCda++ vi+f +tg+ly++ss Zmw_sc00964.1.g00090.1.sm.mk 57 FSSSRAGMFKKAKELSILCDAQIGVIVFTNTGQLYDFSS 95 77789********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	27.824	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.1E-23	1	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-33	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-25	38	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.19E-14	57	97	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-14	57	93	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.507	57	97	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-6	61	96	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MVRGKTVLKR IENEANRQVT FSKRRAGMFK KAKGLSILCD AQIGVIVFTN TGQLYDFSSS 60 RAGMFKKAKE LSILCDAQIG VIVFTNTGQL YDFSSSRLCC VWFVGPIKQI VIASKNVIFD 120 IVI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165070.1	7e-25	MADS-box transcription factor 23-like
TrEMBL	W9QWB2	1e-34	W9QWB2_9ROSA; MADS-box protein
STRING	XP_010091612.1	2e-35	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398