PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00964.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20883.5 Da    PI: 8.2623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00964.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94e-26959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krie++ nrqvtfskRr+g++KKA+EL +LCda++ vi+f  tg+ly++ss
  Zmw_sc00964.1.g00110.1.sm.mkhc  9 KRIESEANRQVTFSKRRAGVFKKAKELATLCDAQIGVIVFTDTGQLYDFSS 59
                                    79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.665161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-34160IPR002100Transcription factor, MADS-box
CDDcd002656.27E-37278No hitNo description
SuperFamilySSF554552.35E-29278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-24323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRGKTVLKR IESEANRQVT FSKRRAGVFK KAKELATLCD AQIGVIVFTD TGQLYDFSSS  60
SMKSIIERYH HVKEGQQNVT SSTDAKEQTL LDQIEQFNKK ASIMNNENEE LKRKISIVRQ  120
ENNNLKELHG LLEINRENRD SVSQCSIKSQ HRVNVERLDL HQPHREEMEP EDGPTLDLRL  180
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-191100191MEF2C
5f28_B5e-191100191MEF2C
5f28_C5e-191100191MEF2C
5f28_D5e-191100191MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656060.13e-42PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A0E0LBE33e-45A0A0E0LBE3_ORYPU; Uncharacterized protein
STRINGOPUNC06G13170.15e-46(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3566034