PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00965.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 454aa MW: 49338.9 Da PI: 6.2329

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00965.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	98	123	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ ++GtC++G +CkF+H+ Zmw_sc00965.1.g00100.1.sm.mkhc 98 PGEPDCNYYVKFGTCRFGTKCKFNHP 123 5789*********************8 PP
2	zf-CCCH	19.1	2.3e-06	222	240	4	22
---SGGGGTS--TTTTT-S CS zf-CCCH 4 elCrffartGtCkyGdrCk 22 e+C+++a G Ck+G Ck Zmw_sc00965.1.g00100.1.sm.mkhc 222 EECKYYATPGGCKFGKACK 240 79****************9 PP
3	zf-CCCH	33.9	5.1e-11	268	292	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C f++rtG Cky +CkF+H+ Zmw_sc00965.1.g00100.1.sm.mkhc 268 GEKECLFYMRTGSCKYSINCKFHHP 292 7899********************9 PP
4	zf-CCCH	24.8	3.8e-08	404	429	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG+ C F+H++ Zmw_sc00965.1.g00100.1.sm.mkhc 404 DRPVCTYYGRFGVCKYGPACMFNHPF 429 689*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.4E-5	97	124	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.821	97	125	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-7	99	123	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-5	102	125	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.629	218	246	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0049	219	245	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.526	266	294	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.9E-5	266	293	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-8	268	292	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.09E-5	269	293	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.404	402	430	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.002	403	429	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-5	404	429	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.59E-5	405	429	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MADADAHPPL PGGDAASSPI ASISPSYSAA AAAAIEEQLA GLGLTVAGGE AAFEPSGWDD 60 GPVPVVAGDD EVVPGEKVQA AVATSPAADA RVRFPRRPGE PDCNYYVKFG TCRFGTKCKF 120 NHPARKKCRA PKEEYEGLAP DISDSSGFDD KGSASNSIQG ADDKGFEYTS ENYRKTSNEI 180 AAEPENESYS KKSDETNVTK HKIPKGAKDK RRETVAEGST LEECKYYATP GGCKFGKACK 240 NLHREGKEGK PEAEKIDLNF LGLPLRPGEK ECLFYMRTGS CKYSINCKFH HPDPSNVSSK 300 EPVLEHENSD TPQENVQAPS QTSVPIWPNQ RSMNEQHVPF VAPAQQYNAG MMPPQGVYPT 360 PDWSGYHQVP LNPYYPPGVP FQHFPPHLNH QMYSTADIPG HQQDRPVCTY YGRFGVCKYG 420 PACMFNHPFN FGPPVHAAGP PIPGQYPTPA NFTV

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MADADAHPPL PGGDAASSPI ASISPSYSAA AAAAIEEQLA GLGLTVAGGE AAFEPSGWDD  60
GPVPVVAGDD EVVPGEKVQA AVATSPAADA RVRFPRRPGE PDCNYYVKFG TCRFGTKCKF  120
NHPARKKCRA PKEEYEGLAP DISDSSGFDD KGSASNSIQG ADDKGFEYTS ENYRKTSNEI  180
AAEPENESYS KKSDETNVTK HKIPKGAKDK RRETVAEGST LEECKYYATP GGCKFGKACK  240
NLHREGKEGK PEAEKIDLNF LGLPLRPGEK ECLFYMRTGS CKYSINCKFH HPDPSNVSSK  300
EPVLEHENSD TPQENVQAPS QTSVPIWPNQ RSMNEQHVPF VAPAQQYNAG MMPPQGVYPT  360
PDWSGYHQVP LNPYYPPGVP FQHFPPHLNH QMYSTADIPG HQQDRPVCTY YGRFGVCKYG  420
PACMFNHPFN FGPPVHAAGP PIPGQYPTPA NFTV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807655.1	0.0	zinc finger CCCH domain-containing protein 65-like isoform X1
Swissprot	Q2QTY2	1e-172	C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBL	A0A2T7EFS5	0.0	A0A2T7EFS5_9POAL; Uncharacterized protein
STRING	Pavir.Cb01040.1.p	1e-179	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7928	35	48

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]