PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00966.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 713aa MW: 76802.9 Da PI: 6.5593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00966.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.4e-05	546	567	4	25
HHHHHHHHHHHHHHHHHHHHHC CS HLH 4 ahnerErrRRdriNsafeeLre 25 +h e+Er+RR+++N++f Lr Zmw_sc00966.1.g00120.1.am.mk 546 NHVEAERQRREKLNQRFYALRA 567 799**************99996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	9.2E-52	93	273	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.343	542	599	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-10	545	604	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.46E-8	545	586	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.6E-6	546	604	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-4	548	588	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MPPLIKRASL LFWDISLAFP SAPSVSTISP LAPVPRPSMN LWTDDNASMM EAFMASADLT 60 WGTVGGDGSA GATPPPPFHQ MPAAAPAFNQ DTLQQRLQAI IEGSRETWTY AIYWQSSVDA 120 GSGASLLGWG DGYYKGCDED KRRQRPLTPA DQVEQEHRKR VLRELNSLIS GGAPAPDEAV 180 EEEVTDTEWF FLVSMTQSFS HGSGLPAQVF FSGQPNWISS GLSAAPCERA RQAYTFGLRT 240 MVCVPVGTGV LELGSTDVIF HTAESMGKIR SLFGGGAGPG SWQPQQQPAA GAEHAETDLW 300 LADTPATDMK DTMSHPAAEI SVSKPPQIHF ENVTTTTSTL TENPSPSVQA PSAPQPAVPV 360 PPQRQHHQQQ SHVQQGPFRR ELNFSEFASN PSVVSGPPFF KPESGEILSF GADSTSRRNP 420 SPAPPTTTAP GSLFSQNTAT ITAAATNDAK NNNKRSMEAT SRASNTNLHA APTANEGMLS 480 FSSAPTTRPS TGTGAPAKSE SDHSDLDASV REVESSRVVA PPPPEAEKRP RKRGRKPANG 540 REEPLNHVEA ERQRREKLNQ RFYALRAVAS LLGDAISYIN ELRGKLTALE SDKETMQFQI 600 EALKKERDAR PAPQAGGFGH DAGPRCHACH KRNHPSARLM TALRELDLDV YHASVSVVAV 660 KMASRIYSQD QLNAALYSRL AEPGTVMGRN DTVTLTHLLL VVVVVVTVNS GMA

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MPPLIKRASL LFWDISLAFP SAPSVSTISP LAPVPRPSMN LWTDDNASMM EAFMASADLT  60
WGTVGGDGSA GATPPPPFHQ MPAAAPAFNQ DTLQQRLQAI IEGSRETWTY AIYWQSSVDA  120
GSGASLLGWG DGYYKGCDED KRRQRPLTPA DQVEQEHRKR VLRELNSLIS GGAPAPDEAV  180
EEEVTDTEWF FLVSMTQSFS HGSGLPAQVF FSGQPNWISS GLSAAPCERA RQAYTFGLRT  240
MVCVPVGTGV LELGSTDVIF HTAESMGKIR SLFGGGAGPG SWQPQQQPAA GAEHAETDLW  300
LADTPATDMK DTMSHPAAEI SVSKPPQIHF ENVTTTTSTL TENPSPSVQA PSAPQPAVPV  360
PPQRQHHQQQ SHVQQGPFRR ELNFSEFASN PSVVSGPPFF KPESGEILSF GADSTSRRNP  420
SPAPPTTTAP GSLFSQNTAT ITAAATNDAK NNNKRSMEAT SRASNTNLHA APTANEGMLS  480
FSSAPTTRPS TGTGAPAKSE SDHSDLDASV REVESSRVVA PPPPEAEKRP RKRGRKPANG  540
REEPLNHVEA ERQRREKLNQ RFYALRAVAS LLGDAISYIN ELRGKLTALE SDKETMQFQI  600
EALKKERDAR PAPQAGGFGH DAGPRCHACH KRNHPSARLM TALRELDLDV YHASVSVVAV  660
KMASRIYSQD QLNAALYSRL AEPGTVMGRN DTVTLTHLLL VVVVVVTVNS GMA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	5e-61	86	273	2	192	Transcription factor MYC3
4rqw_B	5e-61	86	273	2	192	Transcription factor MYC3
4rs9_A	5e-61	86	273	2	192	Transcription factor MYC3
4yz6_A	5e-61	86	273	2	192	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	527	535	KRPRKRGRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269\|PubMed:24647160}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698381.1	0.0	LOW QUALITY PROTEIN: transcription factor MYC2-like
Swissprot	Q336P5	0.0	MYC2_ORYSJ; Transcription factor MYC2
TrEMBL	A0A1E5W733	0.0	A0A1E5W733_9POAL; Transcription factor MYC2
STRING	GRMZM2G001930_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4452	31	57

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Cai Q, et al. Jasmonic acid regulates spikelet development in rice. Nat Commun, 2014. 5: p. 3476 [PMID:24647160]