PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00970.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 197aa MW: 21500 Da PI: 9.5822

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00970.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	83	136	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+ n++++ +++e LA kl+L rqV vWFqNrRa++ Zmw_sc00970.1.g00030.1.am.mk 83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARWQ 136 67789***********************************************95 PP
2	HD-ZIP_I/II	82.9	4.5e-27	83	136	2	55
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRAR++ Zmw_sc00970.1.g00030.1.am.mk 83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARWQ 136 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-19	62	135	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.07E-18	72	135	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	78	138	IPR001356	Homeobox domain
SMART	SM00389	9.8E-15	80	142	IPR001356	Homeobox domain
CDD	cd00086	3.15E-16	81	135	No hit	No description
Pfam	PF00046	2.5E-16	83	136	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MGATSPSASR LELTMAVTGL SSSSCSEGLA GWNNGNGSGN SNVRMDLDMN QPASGCEEEE 60 FPMGSVEEDE EERACGGGPH RPKKLRLSKE QSRLLEESFR LNHTLTPKQK EALAVKLKLR 120 PRQVEVWFQN RRARWQGALG IRIETCAASQ TRDNNTHHRG HGSRGRAHRS PRATGCGVPV 180 PPAPALRSVL GRHEKDG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819203.1	7e-61	homeobox-leucine zipper protein HOX3-like
Swissprot	Q0JKX1	2e-57	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	2e-57	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A2T7DJ80	5e-60	A0A2T7DJ80_9POAL; Uncharacterized protein
STRING	Pavir.Eb01766.1.p	3e-58	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6826	35	49