PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00980.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 178aa MW: 19911.6 Da PI: 9.4703

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00980.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.2	2.4e-10	89	138	1	47
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 r WT++ d+l+ +a + + ++ +W+ Iar +g g++ ++k ++q + Zmw_sc00980.1.g00080.1.am.mk 89 RSQWTKQQDKLFEQALAVYDKEtpdRWHNIARAVGGGKSVDEVKTHYQLL 138 679***************99***********************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.2E-9	88	141	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.818	89	139	IPR017877	Myb-like domain
Pfam	PF00249	2.5E-7	89	137	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.09E-12	90	146	IPR009057	Homeodomain-like
CDD	cd00167	4.73E-7	92	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MRDPPLSSFV GRRSLFLGDR WHSFWSCTLR LTDALFSSLS RVTHHERTTL QGTSYPAGRP 60 GPITEQGPSA LDQTVVGSLH ISMASMSMRS QWTKQQDKLF EQALAVYDKE TPDRWHNIAR 120 AVGGGKSVDE VKTHYQLLVH DVGRIEKGEV AFPAYRCPGV GSMPMGGYEA DRLKHLKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-23	92	178	11	92	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154612.1	1e-43	protein RADIALIS-like 3
Refseq	XP_020154876.1	1e-43	protein RADIALIS-like 3
Swissprot	Q1A173	4e-28	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A453A097	3e-42	A0A453A097_AEGTS; Uncharacterized protein
TrEMBL	N1QTK1	3e-42	N1QTK1_AEGTA; DnaJ homolog subfamily C member 2
STRING	EMT00143	4e-43	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230