PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00980.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 93aa MW: 10688.8 Da PI: 9.0072

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00980.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33	1.4e-10	14	61	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W+ d+l+ +a + + ++ +W+ +ar mg +++ ++++ ++qk+ Zmw_sc00980.1.g00090.1.am.mk 14 EWSRSQDKLFERALAVYDKDtpdRWHNVARFMGGTKSVEEVRRHYQKL 61 7*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.388	7	62	IPR017877	Myb-like domain
SMART	SM00717	7.4E-10	11	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.88E-12	13	70	IPR009057	Homeodomain-like
CDD	cd00167	5.50E-8	14	61	No hit	No description
Pfam	PF00249	3.5E-8	14	61	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MTSNNRRSSP SPSEWSRSQD KLFERALAVY DKDTPDRWHN VARFMGGTKS VEEVRRHYQK 60 LEEDVARIES GEVPFHWYGG AAPPPVTTVQ RGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	7e-21	15	78	11	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818796.1	1e-40	protein RADIALIS-like 3 isoform X1
Swissprot	Q1A173	5e-27	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A2T7DJA1	3e-39	A0A2T7DJA1_9POAL; Uncharacterized protein
STRING	Pavir.J13204.1.p	4e-41	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230