PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00987.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 672aa MW: 71801.8 Da PI: 9.8371

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00987.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	601	646	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ k + a++L +Av+YIk+Lq Zmw_sc00987.1.g00160.1.am.mk 601 SIAERVRRTRISERIRRLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 646 689*******************7....467***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.218	595	645	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-15	598	654	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.63E-13	599	650	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-14	600	654	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-9	601	646	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-13	601	651	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MFARSNSATL DANSDQQQES IFFSGVREQR KTIGAAGDAT RRQIARTRAA HALVNGDLFC 60 VLFISLFVIC LGGGPKEACG RSGSTWKCGA GRTLSFTWAW VVARGLSSQQ WPWAHGGAAK 120 GSLPSPRGGR MAAATSGRAP PPRGHFASLI LVTSAIINSA ELSLPHVTLL TRFPTQHNTA 180 QLSVRSSRTP LLSTVTGAPL HLTDPLPLFF LLLQLLLCYA RISPLSRSSL RLQRARSDRK 240 QQRAREGDVG SNCCRRPLHL VMYGSAVSKD LNQLPDVQPQ PAAAPQMSAP GLLRYRSAPS 300 NLLGELCAEG FHAAGGGAAG HHHRTDHAAD AALTRFHAGN HDDVGDCKPP RPAAAAHFLH 360 DASSMASQQQ HQLVYESQQQ QQHMAAAQMD GFYSYRTLGF RGTEHDANVA AVGSGNSLLR 420 QSSSPAGFLN HLNMDNGYGN MFRVGGMAAG EFRNGGDARL KGQLSYSSRQ GSVMSQISEM 480 GSEELGSGSP EAGSNGGTAA RSYSGIIPAA GGYPMDGGWD DACAAPDQNH LSGAKRSRDP 540 AHAPPVSNGH HLAPQLSLPS GGGCNGKTSA DMAAIEKFLH FQDAVPCKIR AKRGCATHPR 600 SIAERVRRTR ISERIRRLQE LVPNMEKQTN TADMLDLAVD YIKDLQKQVK GLNDGRANCT 660 CSAGKRQNQF TC

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MFARSNSATL DANSDQQQES IFFSGVREQR KTIGAAGDAT RRQIARTRAA HALVNGDLFC  60
VLFISLFVIC LGGGPKEACG RSGSTWKCGA GRTLSFTWAW VVARGLSSQQ WPWAHGGAAK  120
GSLPSPRGGR MAAATSGRAP PPRGHFASLI LVTSAIINSA ELSLPHVTLL TRFPTQHNTA  180
QLSVRSSRTP LLSTVTGAPL HLTDPLPLFF LLLQLLLCYA RISPLSRSSL RLQRARSDRK  240
QQRAREGDVG SNCCRRPLHL VMYGSAVSKD LNQLPDVQPQ PAAAPQMSAP GLLRYRSAPS  300
NLLGELCAEG FHAAGGGAAG HHHRTDHAAD AALTRFHAGN HDDVGDCKPP RPAAAAHFLH  360
DASSMASQQQ HQLVYESQQQ QQHMAAAQMD GFYSYRTLGF RGTEHDANVA AVGSGNSLLR  420
QSSSPAGFLN HLNMDNGYGN MFRVGGMAAG EFRNGGDARL KGQLSYSSRQ GSVMSQISEM  480
GSEELGSGSP EAGSNGGTAA RSYSGIIPAA GGYPMDGGWD DACAAPDQNH LSGAKRSRDP  540
AHAPPVSNGH HLAPQLSLPS GGGCNGKTSA DMAAIEKFLH FQDAVPCKIR AKRGCATHPR  600
SIAERVRRTR ISERIRRLQE LVPNMEKQTN TADMLDLAVD YIKDLQKQVK GLNDGRANCT  660
CSAGKRQNQF TC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151233.1	1e-148	uncharacterized protein LOC100284866
TrEMBL	A0A0A9VBR8	1e-167	A0A0A9VBR8_ARUDO; Uncharacterized protein
STRING	GRMZM2G085467_P02	1e-147	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103