PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00994.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 623aa MW: 68293.3 Da PI: 9.9438

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00994.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.3e-18	369	418	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg++ ++eeAa+a++a +++++g Zmw_sc00994.1.g00110.1.am.mkhc 369 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDAEARRIRG 418 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.22E-21	369	427	IPR016177	DNA-binding domain
CDD	cd00018	5.45E-29	369	428	No hit	No description
Gene3D	G3DSA:3.30.730.10	4.2E-31	369	427	IPR001471	AP2/ERF domain
SMART	SM00380	4.3E-36	369	432	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.709	369	426	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-11	370	418	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.4E-10	370	381	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.4E-10	392	408	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
TRRGSFLKGD PAHDRHVRLA ARDDYSLCYS PTKKSAASTR ARSLGSAKAT RGGRRPRAGA 60 ARSLCLPSVQ AETLFTHDTR RVSSTRKRGG NGSVTGGVRG TLRVVIAWPA GIGGVWLGCF 120 RPGDRRRDHG GAAVDSSEET CRNRSGNAMD NNTTPNLFRL NHRHSSSSRV RILWLTWGPH 180 QAFRHLPASP AHHTASHIKL PSPAALPSIV RLVGKKLVCH FAFPSRTRFP FLPFRRGGCG 240 GARGADRAMC GGAILANLTK HPEPRRRLTE GALWPEKKKP KRGGAGARRR YPAGFVEEDD 300 EDFEADFEEF EGDSGESDLE LGQGEDDDVV EIKPFAAKRN FPRDGLSTMT TANFDGPAAR 360 SAKRKRKNQY RGIRQRPWGK WAAEIRDPRK GVRVWLGTYN SPEEAARAYD AEARRIRGKK 420 AKVNFPDTPT GVQKRRASPA AARAPKSSFE QKPAVKAAMN NPINTNGSCC PSADYTSNKQ 480 VVQLDDLTFS PALNSPAPYE DPIMNLHSDQ GSNSFSYSDF GWENDTKTPD ITSITPVSTI 540 AEGDESEFVN KNSNGSLVPP VMDNNPVDLT DGLTDLEPYM RFILDGGASE SIDSLLNLDG 600 SQDVLSNMDL WSFDDMPISG DFY

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

TRRGSFLKGD PAHDRHVRLA ARDDYSLCYS PTKKSAASTR ARSLGSAKAT RGGRRPRAGA  60
ARSLCLPSVQ AETLFTHDTR RVSSTRKRGG NGSVTGGVRG TLRVVIAWPA GIGGVWLGCF  120
RPGDRRRDHG GAAVDSSEET CRNRSGNAMD NNTTPNLFRL NHRHSSSSRV RILWLTWGPH  180
QAFRHLPASP AHHTASHIKL PSPAALPSIV RLVGKKLVCH FAFPSRTRFP FLPFRRGGCG  240
GARGADRAMC GGAILANLTK HPEPRRRLTE GALWPEKKKP KRGGAGARRR YPAGFVEEDD  300
EDFEADFEEF EGDSGESDLE LGQGEDDDVV EIKPFAAKRN FPRDGLSTMT TANFDGPAAR  360
SAKRKRKNQY RGIRQRPWGK WAAEIRDPRK GVRVWLGTYN SPEEAARAYD AEARRIRGKK  420
AKVNFPDTPT GVQKRRASPA AARAPKSSFE QKPAVKAAMN NPINTNGSCC PSADYTSNKQ  480
VVQLDDLTFS PALNSPAPYE DPIMNLHSDQ GSNSFSYSDF GWENDTKTPD ITSITPVSTI  540
AEGDESEFVN KNSNGSLVPP VMDNNPVDLT DGLTDLEPYM RFILDGGASE SIDSLLNLDG  600
SQDVLSNMDL WSFDDMPISG DFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-18	368	426	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	5e-18	369	426	5	63	ATERF1
3gcc_A	5e-18	369	426	5	63	ATERF1
5wx9_A	1e-17	369	426	14	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816350.1	0.0	ethylene-responsive transcription factor 1
Swissprot	Q6K7E6	1e-162	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	A0A3L6RNH8	0.0	A0A3L6RNH8_PANMI; Ethylene-responsive transcription factor 1-like
STRING	Pavir.Aa00281.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1039	38	134

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]