PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00996.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 662aa MW: 70399.8 Da PI: 9.1715

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00996.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.5e-10	365	393	3	31
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 r+h+e+ErrRR+riN +++Lr+llP+ + Zmw_sc00996.1.g00270.1.am.mk 365 RSHSEAERRRRQRINGHLARLRSLLPNTT 393 78************************963 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.731	362	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.05E-6	365	391	No hit	No description
Pfam	PF00010	6.5E-8	365	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-10	365	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.91E-10	366	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0011	368	542	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.91E-10	516	547	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-10	516	546	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MISSSRALAG PGPAAALNSH WARLAASNGC RWCRRRHHRI RWADRSLPFA IDRHRSTKQT 60 CTISSALALV STLDSSEGSC ERVAGRAGGA TGSRHAEGRN RSVSFSKAGP GLRLRVGCRT 120 KSKARLRRAG YSCATSYARG EGRGGSERCW NIEEANCKHE PGCTPVSSRL DHYPTGSPPR 180 QEKKKPQEHQ STETNPPRIH QQPRGSTPLS IDRLISSADR SIGMWEAGGL HGSHEALLLH 240 AAGSGAGDVV HGQASGLLPC TWLGPATAPS YPYMAPHAPP APGHLFGVDD AAAGPFGFDI 300 GGYGGGAGVG VGLFGLDPPS HQHHGMVADA GSSRVVWGLL GTLQAELGRM TAKEILDAKA 360 LAASRSHSEA ERRRRQRING HLARLRSLLP NTTKVIDALC DDQLIACTFF PHAYLQIETP 420 GGMQERAYRA PCGMRDRSSS PCKTRAHARV RAHHLSLTQG VATHQKLSSG SSRPGRACKG 480 CSHARDFCKL FLHARMPSSH QTRPLDRLLL SPTATTTLVT DKASLLAEVI EHVKELKRQT 540 SAVLDAAERQ EDQQGDAPSA TQQLLRLLPT EANELTVDAA EDGDGRLAEA DGDDDVDGDG 600 CEGAGAAQSH RRHELVAAVE EALRGIMDRK AASSGDASSS SAGSGSLKRQ RMSGGAYEQG 660 SS

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MISSSRALAG PGPAAALNSH WARLAASNGC RWCRRRHHRI RWADRSLPFA IDRHRSTKQT  60
CTISSALALV STLDSSEGSC ERVAGRAGGA TGSRHAEGRN RSVSFSKAGP GLRLRVGCRT  120
KSKARLRRAG YSCATSYARG EGRGGSERCW NIEEANCKHE PGCTPVSSRL DHYPTGSPPR  180
QEKKKPQEHQ STETNPPRIH QQPRGSTPLS IDRLISSADR SIGMWEAGGL HGSHEALLLH  240
AAGSGAGDVV HGQASGLLPC TWLGPATAPS YPYMAPHAPP APGHLFGVDD AAAGPFGFDI  300
GGYGGGAGVG VGLFGLDPPS HQHHGMVADA GSSRVVWGLL GTLQAELGRM TAKEILDAKA  360
LAASRSHSEA ERRRRQRING HLARLRSLLP NTTKVIDALC DDQLIACTFF PHAYLQIETP  420
GGMQERAYRA PCGMRDRSSS PCKTRAHARV RAHHLSLTQG VATHQKLSSG SSRPGRACKG  480
CSHARDFCKL FLHARMPSSH QTRPLDRLLL SPTATTTLVT DKASLLAEVI EHVKELKRQT  540
SAVLDAAERQ EDQQGDAPSA TQQLLRLLPT EANELTVDAA EDGDGRLAEA DGDDDVDGDG  600
CEGAGAAQSH RRHELVAAVE EALRGIMDRK AASSGDASSS SAGSGSLKRQ RMSGGAYEQG  660
SS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	GRMZM2G526668_P02	8e-42	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33654	3	4