PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01002.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 657aa    MW: 70035.2 Da    PI: 7.4663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01002.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054198215219
                                   EETTTTEEESSHHHHHHH CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                                   +C++Cg+ F+++ +L  H
  Zmw_sc01002.1.g00040.1.am.mk 198 VCENCGEEFTSWKSLLDH 215
                                   6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-4115137IPR007087Zinc finger, C2H2
PROSITE profilePS501578.746115137IPR007087Zinc finger, C2H2
SMARTSM003553.5115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SMARTSM00355260197217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.16E-7365388No hitNo description
PfamPF139124.7E-9366390IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221366393IPR007087Zinc finger, C2H2
SMARTSM003550.13366388IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280368388IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-7470497No hitNo description
PfamPF139129.3E-13474498IPR007087Zinc finger, C2H2
SMARTSM003551.6475497IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995475497IPR007087Zinc finger, C2H2
PROSITE patternPS000280477497IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAVAEASARM QGTIPEDHWS RVSSPRLFYS SSVGPLSLAV ARRYKRCCGT ASSPLSFLLP  60
GSSTPCMPLP EICRDRSIMA IAMENQTPVV QMPLVPASPL PPPPPPPPLP QAYKHHCKVC  120
KKGFVCGRAL GGHMRAHGVA DDVLSADDDD EEDNVFDDDG AGSFVGDSSS EQASPSATTS  180
KRMYTLRANP GRLKSCRVCE NCGEEFTSWK SLLDHGRCNN YEDGDGGTDG STRRSPPLLD  240
EEEVVEEDMA LATAGWSKGK RTRRTKMMVV GNGSVTEMTR LRATSPSSEE EDLANCLVML  300
SSSRSAQPPP AVSDADQESC ASASKDVVDR NRLLVPQPIS MMAPAVPQLK LVAPPQPAST  360
VPRGLFECKA CKKVFTSHQA LGGHRASHKK VKGCFAAKLE SDRRERPQPV TATPRENIKV  420
VDAKTSSVHA ANADGNTSTS GVVTATAAPE TAVTQANEAP SMSAASPAKK KGKVHECSIC  480
HRVFMSGQAL GGHKRCHWLT TGSGDPMTGA VSKFHPIVAQ DHVMHDVCQQ LTLGLPIFSA  540
AHPILDLNNV PTNPSAAMKQ AAELNDSVLC LNEPASLYMP SWTAVHSNGI NVNKAATSSR  600
NVDAAGAAAT EDEADSRNAK KRKISDLKDM NMAGETSPWL QVGIGLRSES KDKSIQE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955118.10.0uncharacterized protein LOC101782881
TrEMBLA0A3L6P9H70.0A0A3L6P9H7_PANMI; Uncharacterized protein
STRINGSi019899m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262