PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01005.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 180aa MW: 20092.2 Da PI: 6.9702

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01005.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.3e-08	15	52	3	38
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlk 38 +W++eEd+ + a +++ + +W+ Ia+ ++ gRt+ Zmw_sc01005.1.g00090.1.am.mk 15 PWSKEEDKVFESALVLWPDHtpdRWAMIAAQLP-GRTPT 52 8***************99*********.*86 PP
2	Myb_DNA-binding	45.3	2e-14	113	157	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++++ +++G g+W+ I+r +Rt+ q+ s+ qky Zmw_sc01005.1.g00090.1.am.mk 113 PWSEEEHRLFLQGLEKYGRGDWRNISRFAVRTRTPTQVASHAQKY 157 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	8.418	8	66	IPR017930	Myb domain
SMART	SM00717	7.6E-5	12	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.38E-11	14	66	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-6	14	59	IPR009057	Homeodomain-like
CDD	cd00167	1.51E-5	15	53	No hit	No description
Pfam	PF00249	6.2E-6	15	52	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.414	106	162	IPR017930	Myb domain
SuperFamily	SSF46689	2.62E-17	107	161	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-11	110	160	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.0E-17	110	161	IPR006447	Myb domain, plants
CDD	cd00167	3.53E-11	113	158	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-12	113	162	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-12	113	157	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEFHHHAGAA AAGRPWSKEE DKVFESALVL WPDHTPDRWA MIAAQLPGRT PTEAWEHYEA 60 LVADVDLIER GAVDVPGCWD AADDGGGGSE ESGPGRRASS GRARGESRRP GIPWSEEEHR 120 LFLQGLEKYG RGDWRNISRF AVRTRTPTQV ASHAQKYFNR QLNPGSRDSK RKSIHDITTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-17	7	77	2	72	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456680.1	6e-98	transcription factor DIVARICATA
Swissprot	Q8S9H7	6e-51	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	C5XQK5	1e-96	C5XQK5_SORBI; Uncharacterized protein
STRING	Sb03g040730.1	2e-97	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2895	36	87

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]