PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01007.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 493aa MW: 52515.6 Da PI: 7.8285

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01007.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.7	5.5e-12	84	114	7	37
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevav 37 +r t+s+Rr+g KKAeELS+LC+++va+ Zmw_sc01007.1.g00010.1.am.mk 84 KKRAATLSRRREGFKKKAEELSILCGVRVAI 114 67999************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	1.5E-10	83	114	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.03E-11	83	114	No hit	No description
SuperFamily	SSF55455	3.66E-9	83	114	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.676	85	114	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MVHGAPASPR CVSKTELVMN EMVTNRQMKS PALIRIWQAD EIKPKQIGSL RRACRAASLL 60 YIRSRLPPRR PARACGGTFR FASKKRAATL SRRREGFKKK AEELSILCGV RVAISEEGVL 120 NAYRALPDAA RAAHTFRAYA DAELGKEAAK LARVRQGGPA ALSCWDKALE GLDAEEARRV 180 LEDVDAAIAA AEDRRVALGL PALLDDSGGL HAVRTFGGGN FVDGLGGGDA NGGRYEQAVW 240 TNDVRAAAMQ PSYGFHQYPA GGGGANMDGY QLQMAAGMNG YQRQMAADLN GYQLQMAADL 300 NSYQLQMASD LNGYSDNNDT RIISWDGIQP CSGGLPHLGY ASQCYGGMSG YRTQHVSSTG 360 GRQPNLYNAV VPAGYPSFDI GHGYIDTPVG NNAQSYAGNF VNAPPALSHT MGTGDNFSNA 420 APAQSPAVYH GGELINGSSY TTQQPAAQQQ IQSATSSQQS LSGIEQLHYF SDVEDAQLQV 480 QLMSSSPSAA HGS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MVHGAPASPR CVSKTELVMN EMVTNRQMKS PALIRIWQAD EIKPKQIGSL RRACRAASLL  60
YIRSRLPPRR PARACGGTFR FASKKRAATL SRRREGFKKK AEELSILCGV RVAISEEGVL  120
NAYRALPDAA RAAHTFRAYA DAELGKEAAK LARVRQGGPA ALSCWDKALE GLDAEEARRV  180
LEDVDAAIAA AEDRRVALGL PALLDDSGGL HAVRTFGGGN FVDGLGGGDA NGGRYEQAVW  240
TNDVRAAAMQ PSYGFHQYPA GGGGANMDGY QLQMAAGMNG YQRQMAADLN GYQLQMAADL  300
NSYQLQMASD LNGYSDNNDT RIISWDGIQP CSGGLPHLGY ASQCYGGMSG YRTQHVSSTG  360
GRQPNLYNAV VPAGYPSFDI GHGYIDTPVG NNAQSYAGNF VNAPPALSHT MGTGDNFSNA  420
APAQSPAVYH GGELINGSSY TTQQPAAQQQ IQSATSSQQS LSGIEQLHYF SDVEDAQLQV  480
QLMSSSPSAA HGS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4572	29	60