PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01022.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 193aa    MW: 21723.6 Da    PI: 4.843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01022.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-111181571054
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   ++RR+riN+++  L+el+P+      +K++ +++Le+AveY+k L
  Zmw_sc01022.1.g00030.1.sm.mk 118 KKRRQRINERLRILQELIPNG-----TKVDISTMLEEAVEYVKFL 157
                                   9******************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-13105167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-14106172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-10117162No hitNo description
PfamPF000102.2E-8118157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEIECATICE ESEMIAHLQS VFWGSSDLDV DPNLPSSNIS SLIDNESFCS GLVLNITQNV  60
AFERKHDNFS SENGATLGSK RKIQTDELMI SGEEDCAVPA AMRARKKSEK DSQSRYAKKR  120
RQRINERLRI LQELIPNGTK VDISTMLEEA VEYVKFLHLQ IKLLSSDELW MYAPLAYRGI  180
NIGGHLDALS AQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104120RKKSEKDSQSRYAKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809609.14e-62transcription factor bHLH84-like
TrEMBLA0A2S3HE598e-61A0A2S3HE59_9POAL; Uncharacterized protein
TrEMBLA0A2T7EHD88e-61A0A2T7EHD8_9POAL; Uncharacterized protein
STRINGORGLA12G0196200.13e-58(Oryza glaberrima)
STRINGOBART12G13380.13e-58(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123