PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01029.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 312aa    MW: 33273.8 Da    PI: 4.0709
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01029.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-161663148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg WT++Ed +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  Zmw_sc01029.1.g00130.1.am.mk 16 RGLWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                                  788*****************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-23766IPR009057Homeodomain-like
PROSITE profilePS5129420.1841167IPR017930Myb domain
SMARTSM007174.7E-121565IPR001005SANT/Myb domain
PfamPF002491.6E-141663IPR001005SANT/Myb domain
SuperFamilySSF466898.08E-221890IPR009057Homeodomain-like
CDDcd001671.47E-101963No hitNo description
Gene3DG3DSA:1.10.10.603.5E-76790IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRGRAPCCD KVGLNRGLWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTVDEEETI IKLHGLLGNK EQPKAGSTKE DGAAPITSSS ASSSTSTANS  120
SGDVGEQCGT SQEPDAIPPP LETDIDISGM LVDAFPAMAA PMPPQSSPCS SSTLTTSSTC  180
VGGGGVEDLI ELPVIDIELD IWDIIDGAAD VPDVWGAGHG DATVPCTGAT VSTSEAGEGE  240
ASDWWLENLE RELGLCGPPE DSRAQSDLLL ADTEGDPVSN YFQNGPAIAE LSDRLPLCYD  300
QRDESSAFDQ EW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-13149025100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814304.11e-113myb-related protein Zm1-like
SwissprotP200241e-104MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A2S3GS791e-111A0A2S3GS79_9POAL; Uncharacterized protein
STRINGPavir.Aa01159.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]