PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01030.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 177aa MW: 18702.2 Da PI: 8.5069

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01030.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F++ L H+++H Zmw_sc01030.1.g00040.1.am.mk 41 YTCGYCRREFPSAQALGGHMNVH 63 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.04E-6	39	68	No hit	No description
PROSITE profile	PS50157	10.824	41	68	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.7E-6	41	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MERDHGRGLK QQPATAAWTP SNICLNPCFS WPVPPPPSSS YTCGYCRREF PSAQALGGHM 60 NVHRRDRARL RQCCSAFAPS PNLIAAHHHR WAAAAPRPPL PNLNLLPPHC TNAATAEPVV 120 YSFFSATVSA AAAPAARKAA VGVSLDLGIA GGVCNRGGGA AEEGGLDLEL RLGCSWE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975075.2	2e-47	transcriptional regulator SUPERMAN
TrEMBL	A0A1E5W4I1	2e-56	A0A1E5W4I1_9POAL; Uncharacterized protein
STRING	Pavir.J31403.1.p	2e-53	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4667	30	65