PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01033.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 293aa    MW: 30066.7 Da    PI: 8.3022
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01033.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.33.3e-323691458
                   ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                                   +Y+eC++NhAaslGghavDGCgEfmp +g++ +++++l+CaACgCHRnFHRr++ 
  Zmw_sc01033.1.g00020.1.am.mk 36 PKYRECRRNHAASLGGHAVDGCGEFMPLPGADaADPSSLNCAACGCHRNFHRRTEL 91
                                  58******************************99*******************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015663.5E-293789IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.2E-273789IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-193888IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8893889IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.3E-1590132IPR009057Homeodomain-like
SuperFamilySSF466891.25E-691131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDAMDVKQYK AVVFPNGGVA KKVKPAAVAP AVVGEPKYRE CRRNHAASLG GHAVDGCGEF  60
MPLPGADAAD PSSLNCAACG CHRNFHRRTE LSERLGWRLQ KRDEAIVDEW CRDIGVGKGV  120
FKVWMHNNKH NFLGGHSARR SASASAGAPT AAAAAALHNH TPTAAGSAPP FHPSAPSPPP  180
PPVLTSSSPG ATGFINININ GAASSAPASY HEKINGSSSS QSARVADAVE PSTGGTVRDG  240
MGYEEKGAAF CRAGGAIDAE KASSLGDGLA AVTSQIMQSY SFAEVAALVI ALG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698877.14e-46zinc-finger homeodomain protein 9
TrEMBLA0A0E0QRE23e-63A0A0E0QRE2_ORYRU; Uncharacterized protein
STRINGORUFI09G10950.14e-64(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374