PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01045.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 232aa    MW: 25347.6 Da    PI: 10.6255
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01045.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS65.79.5e-218618081172
                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skee 157
                                    +l+++ sP++ ++  +aN aI+eav  ++++H +Dfd+s + Q +aL q La+R  +  sl++T++++p+s     ++ +
  Zmw_sc01045.1.g00090.1.sm.mk  86 SQLLHDRSPWFHLALHAANVAIVEAVGDHRAIHLVDFDVSTP-QHAALVQYLADRHVPGTSLKVTAINDPSSPfaqsQTAT 165
                                   57899**********************************998.99************************998889999999 PP

                          GRAS 158 leetgerLakfAeel 172
                                   l +++erL+k+A+++
  Zmw_sc01045.1.g00090.1.sm.mk 166 LPAVEERLKKLADRV 180
                                   ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.3921232IPR005202Transcription factor GRAS
PfamPF035143.3E-1886180IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MWGAEKVEND TYTFSGFNNI GGRNNRISAD PGKPNEPSND AKTTDQVLIP TPALQSSSLQ  60
RRRRPGPICA VTHGAGLLRR RRVLGSQLLH DRSPWFHLAL HAANVAIVEA VGDHRAIHLV  120
DFDVSTPQHA ALVQYLADRH VPGTSLKVTA INDPSSPFAQ SQTATLPAVE ERLKKLADRV  180
SNAGLDDGGS QGRGRRELLQ HPCSAQSQKG TRRQRQVVAV PFFFFLIVGK TD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16181RRRPGPICAVTHGAGLLRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UMX32e-40A0A1E5UMX3_9POAL; Scarecrow-like protein 8
TrEMBLB4FTE31e-40B4FTE3_MAIZE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2492236