PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01057.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 85aa MW: 9853.62 Da PI: 10.703

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01057.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.6	1.8e-19	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 +ri+n +nrqvtfskRr g++KKA EL +LCda+ Zmw_sc01057.1.g00230.1.sm.mkhc 9 ERIDNRTNRQVTFSKRRSGLMKKARELGILCDAD 42 69******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.0E-19	1	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.27E-19	1	45	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.591	1	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-17	10	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-16	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MGRGKIAIER IDNRTNRQVT FSKRRSGLMK KARELGILCD ADEQLLADEI IQLNQKGLAL 60 QKENIELKKE VGIVHRHKME LQKKM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020984555.1	5e-21	agamous-like MADS-box protein AGL16 isoform X7
Refseq	XP_025613275.1	5e-21	agamous-like MADS-box protein AGL16 isoform X6
TrEMBL	A0A4P1QZH4	4e-21	A0A4P1QZH4_LUPAN; Uncharacterized protein
STRING	Pavir.Ea01057.1.p	6e-21	(Panicum virgatum)
STRING	Si003917m	5e-21	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34155	3	4