PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01058.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 175aa MW: 20519.3 Da PI: 8.8598

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01058.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.5	8.5e-22	54	109	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++ Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k Zmw_sc01058.1.g00130.1.am.mk 54 KKRYHRHTPRQIQMLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 109 678899***********************************************998 PP
2	HD-ZIP_I/II	63.3	6e-21	57	138	3	84
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +r + q+++LE +F+e + + +++++l+reLgl+prq++ WFqnrR +k+++ d +L+++ d+++ en ++++ Zmw_sc01058.1.g00130.1.am.mk 57 YHRHTPRQIQMLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMKAQHERADNCFLRAENDKIRCENIAMREA 137 3477889*******************************************************************9999876 PP HD-ZIP_I/II 84 v 84 Zmw_sc01058.1.g00130.1.am.mk 138 L 138 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.1E-22	40	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-23	48	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.042	51	111	IPR001356	Homeobox domain
SMART	SM00389	6.9E-20	52	115	IPR001356	Homeobox domain
CDD	cd00086	3.61E-17	54	112	No hit	No description
Pfam	PF00046	2.4E-19	54	109	IPR001356	Homeobox domain
PRINTS	PR00031	4.2E-5	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.2E-5	91	107	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSHSPLSSFP SVRRIALEAT GRPPRSTAEV CVRARAAMDF GDDVMEGSDS QRRKKRYHRH 60 TPRQIQMLEA MFKECPHPDE NQRMQLSREL GLEPRQIKFW FQNRRTQMKA QHERADNCFL 120 RAENDKIRCE NIAMREALRN VICPTCGGPH VADDYFDEQK LRMENARLKE EASLF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828617.1	7e-88	homeobox-leucine zipper protein ROC8-like
Swissprot	Q69T58	3e-84	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A1D6QDN7	3e-89	A0A1D6QDN7_MAIZE; Homeodomain leucine zipper family IV protein
TrEMBL	A0A3L6F4D2	6e-89	A0A3L6F4D2_MAIZE; Homeobox-leucine zipper protein ROC8
STRING	Pavir.Aa00335.1.p	1e-87	(Panicum virgatum)
STRING	Pavir.J34398.1.p	1e-87	(Panicum virgatum)
STRING	GRMZM2G145690_P01	7e-87	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15929	9	15