PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01062.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 530aa MW: 56480.2 Da PI: 8.9795

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01062.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	38.2	1.9e-12	507	530	1	24
GATA 1 CsnCgttkTplWRrgpdgnktLCn 24 Cs+Cg+ kTp+WR gp+g ktLCn Zmw_sc01062.1.g00150.1.am.mk 507 CSHCGVQKTPQWRAGPEGAKTLCN 530 ***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	8.774	501	530	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.18E-7	504	530	No hit	No description
Gene3D	G3DSA:3.30.50.10	6.3E-9	505	530	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.23E-8	506	530	No hit	No description
Pfam	PF00320	3.2E-10	507	530	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MQHASHPTPP DPVRNGHVCR PARSDDDSAS PAAWNGALII QQARRPQRQR EQEQQFTIFG 60 ARQVQFKSSG PAPHTPPFSK GPIHGSSTSS RRGPPRVGPS ASRRAPLIPC PACRLNLTRP 120 PHASGPSVVP AAGIATRRRA ISVQLPSIER STKRSSLVVS FLPSASSSSP FFSPRERRRH 180 RTGPEFVAPF LPTCAAPAMP SYANNHHSHM DGKMDAMKSN AFPPEEAAEE AANAAALGER 240 DGFSVEDLLD LEEFGEPDKD ETDHQDAAPP PAADETEENS PGDDSQPSSM VTFELPPPPP 300 EMVDLPAHDV EEELEWVSRI MDDSLSEVPP PPQPRAVAGA AVQAARPPLA QRMPYDSAYR 360 ALPPAPPGPP RAPTVCALST EALVPVKAKR SKRSRSSAWS MSGASLFSDS ASSSSTATTS 420 SCSSSSASFS PFFLLDSPPP FGFPDFEGYP HFLPPPAQAR KSSKHGKGSK HKPKKRGRKP 480 KHAPQLTGAA AASAAAASLV AQGERRCSHC GVQKTPQWRA GPEGAKTLCN

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MQHASHPTPP DPVRNGHVCR PARSDDDSAS PAAWNGALII QQARRPQRQR EQEQQFTIFG  60
ARQVQFKSSG PAPHTPPFSK GPIHGSSTSS RRGPPRVGPS ASRRAPLIPC PACRLNLTRP  120
PHASGPSVVP AAGIATRRRA ISVQLPSIER STKRSSLVVS FLPSASSSSP FFSPRERRRH  180
RTGPEFVAPF LPTCAAPAMP SYANNHHSHM DGKMDAMKSN AFPPEEAAEE AANAAALGER  240
DGFSVEDLLD LEEFGEPDKD ETDHQDAAPP PAADETEENS PGDDSQPSSM VTFELPPPPP  300
EMVDLPAHDV EEELEWVSRI MDDSLSEVPP PPQPRAVAGA AVQAARPPLA QRMPYDSAYR  360
ALPPAPPGPP RAPTVCALST EALVPVKAKR SKRSRSSAWS MSGASLFSDS ASSSSTATTS  420
SCSSSSASFS PFFLLDSPPP FGFPDFEGYP HFLPPPAQAR KSSKHGKGSK HKPKKRGRKP  480
KHAPQLTGAA AASAAAASLV AQGERRCSHC GVQKTPQWRA GPEGAKTLCN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151060.1	2e-98	uncharacterized protein LOC100284693
TrEMBL	A0A0A9D1L5	4e-97	A0A0A9D1L5_ARUDO; Uncharacterized protein
TrEMBL	B6TWI7	4e-97	B6TWI7_MAIZE; GATA zinc finger family protein
STRING	GRMZM2G404973_P03	1e-89	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1417	33	108