PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01069.1.g00280.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 234aa MW: 25381.5 Da PI: 4.8633

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01069.1.g00280.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.1	2e-40	54	153	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + Zmw_sc01069.1.g00280.1.am.mk 54 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNMIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVC 134 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+q ++lk++la++++ Zmw_sc01069.1.g00280.1.am.mk 135 RLQKQANELKVQLARAQAD 153 ************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.293	53	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-40	54	151	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEYSNASTGM TAAEHYYRSM SPPSWESSSG SPSPSPPSAV QLVGNVAPTV VMSPCAACKI 60 LRRRCADGCV LAPYFPPTEP AKFTTAHRVF GASNMIKLLQ DLPESSRADA VSSMVYEAEA 120 RLRDPVYGCA GAVCRLQKQA NELKVQLARA QADLLNVQAQ HANLLALVCV EVANRRDSPQ 180 QEQQTTSTPL VMDDGGSCSD LGGAGYQMFY DSDLLDSATW PDHEAQLWTY EQRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	53	156	10	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	53	156	10	113	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465424.1	1e-111	LOB domain-containing protein 1
Swissprot	Q9LQR0	2e-63	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2T7CE11	1e-111	A0A2T7CE11_9POAL; Uncharacterized protein
STRING	Pavir.Ib01336.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90