PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01079.1.g00190.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 813aa    MW: 86985.8 Da    PI: 9.9074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01079.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19634685256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  Zmw_sc01079.1.g00190.1.am.mk 634 KYRGVRQRP-WGKYAAEIRDPKKRG--SRVWLGTYDTAVEAARAYDRAAFRMRGA 685
                                   8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-32633693IPR001471AP2/ERF domain
SMARTSM003804.5E-39634698IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22634693IPR016177DNA-binding domain
PfamPF008472.0E-13634684IPR001471AP2/ERF domain
CDDcd000184.17E-29634693No hitNo description
PROSITE profilePS5103224.223634692IPR001471AP2/ERF domain
PRINTSPR003678.3E-13635646IPR001471AP2/ERF domain
PRINTSPR003678.3E-13674694IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MGNKVFCSCC PPSPSNSGYL AAGMDRWTGV VHVPLSRGGP LSRVAASLIL SPTKTLAVPR  60
ANAILFTGDR VRGTGDPTIE RLSDAVHLAG VLAGKLSGET NAWVIDAARF SGSFAVYREL  120
VPSVDAAGDP KGYEPTGFPA AAGVASLLAH GIGEAFQLVL LRLATKLDWG LARRTESNPR  180
NTVGFRPRAR PALVWLDSRA VLTRFSAALA SIFSGARGPS ARCWPLLGKK GVARCGESSP  240
ATLPRALSCG NGEPRNEKNA YALRRVDQQP VRGQSFAAAG VTVASADLVE TMPEIRVTYV  300
LCIQRPRARE PIDPALPVAS KRCTVSINRR LPATSAVEKV LEDDGRGVGS GGVTQKLRRC  360
SRLLHAVFVR LEAQPTPTAK AVHQRARSLS IGGASANRRC RCSRWSRSLI HPKGTTCATE  420
QQALDAGPDF VWPRVGLATF RYFAARVNWV CIGELSMYWP RQTSPPSSQF AVARTPKLRS  480
PLSCRSPLPI APRDMDFSGE GDDFWLQIIR EQCYGGEACL PVPETYAASS AVAPPAQQAY  540
QHTAFTPQQQ QQQQVALVDL THGYADAAAA AAAFQAAEPA APLMIRFGGE PSPRPSLTIS  600
LPPTSHAWGT DVVASLPAHS AAGAAVADVD DFRKYRGVRQ RPWGKYAAEI RDPKKRGSRV  660
WLGTYDTAVE AARAYDRAAF RMRGAKAILN FPNEVGSLGA DFLATPPQHA ARSPNKRKLR  720
DDAQTDVEPA AKSVKTETLT SPASSQTTSL SPATTAASTV TSLSSSEAAG AHEEWLPMTP  780
SSWAWEQFES VFESLPPLSP HPGQMGFPEV IVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26633697468ATERF1
3gcc_A5e-26633697468ATERF1
5wx9_A8e-266346941474Ethylene-responsive transcription factor ERF096