PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01080.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 309aa    MW: 33518.4 Da    PI: 8.2371
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01080.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-084088346
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                    rW +eE+  l+ +v+++G g W++I +         +R+  ++k++w++
  Zmw_sc01080.1.g00080.1.sm.mkhc 40 RWAPEEEASLKAGVAKHGVGKWRAILNDPEfgptlCHRSNVDLKDKWRN 88
                                    9**************************9999999999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.5733394IPR017930Myb domain
SuperFamilySSF466894.1E-143692IPR009057Homeodomain-like
SMARTSM007177.3E-63792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-123889IPR009057Homeodomain-like
CDDcd116606.96E-203990No hitNo description
PfamPF002492.8E-64089IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.102.5E-4155191IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MYMCITHESS LLPVPSHQIY EFSSIFNRTL GLSMGGPKHR WAPEEEASLK AGVAKHGVGK  60
WRAILNDPEF GPTLCHRSNV DLKDKWRNMN INAIALGSRE KGRAAPKKAQ SILNKGNHTK  120
AISKVTSYSN DKTVDEMPIQ AAPSEALNTS NPMKPQSRLE NIVMEAIKNL SEPMGSTQIT  180
IGNYIQVKRK YMIAPILPLS DSHHPKMLLL EDVLKKYSTS AGDDIKALTR SQVDAELALM  240
LTMTPEEAAA AAARAVEEAE AILAEAEAAA AEAEAAEAEA AEHEAAAKAA VEKLNLMKKR  300
NATKSVAKA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982335.12e-77single myb histone 6 isoform X1
SwissprotC0HIA37e-75SMH6_MAIZE; Single myb histone 6
TrEMBLK4ACJ74e-79K4ACJ7_SETIT; Uncharacterized protein
STRINGSi036471m2e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]