PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01082.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 570aa MW: 61798.9 Da PI: 9.8213

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01082.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.5	1.7e-06	108	134	29	55
HHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRake 55 e++ LA+++gL+ +q+ +WF N+R ++ Zmw_sc01082.1.g00040.1.am.mk 108 EKAALAESTGLDGKQINNWFINQRKRH 134 6789********************885 PP
2	ELK	31.6	3.7e-11	36	57	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ Ll+KYsgyL+sL+ E+s Zmw_sc01082.1.g00040.1.am.mk 36 ELKNCLLNKYSGYLSSLWRELS 57 9*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03789	1.6E-8	36	57	IPR005539	ELK domain
SMART	SM01188	2.8E-6	36	57	IPR005539	ELK domain
PROSITE profile	PS51213	9.917	36	56	IPR005539	ELK domain
SMART	SM00389	5.6E-4	58	141	IPR001356	Homeobox domain
CDD	cd00086	8.19E-9	59	137	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-22	61	138	IPR009057	Homeodomain-like
Pfam	PF05920	6.6E-11	76	133	IPR008422	Homeobox KN domain
SuperFamily	SSF46689	3.98E-8	106	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.361	108	137	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	112	135	IPR017970	Homeobox, conserved site
Pfam	PF17181	1.8E-16	482	570	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MFEADDRSCE PGGGGSSEEG EQETDGLPET SDEDKELKNC LLNKYSGYLS SLWRELSRKK 60 KKGKLPRDAR QKLLHWWQLH YRWPYPSVRV RSSFMPPPLG LMAWCELEKA ALAESTGLDG 120 KQINNWFINQ RKRHWKPAPP PMLARADYRL NPHSGGASSS SAHHAALRGE GQYFGGGSSY 180 PRGPAPRTPE RDALHRRVSV HHLQPPGSSS SAHVQTCSFA VDRSTSVSVN HLVPGEQPVE 240 AALHGGGEVV GGERLHYTHC CTKFSTHGSV QYHLGSFPNT AQLKCLAKKS TKSYRCPCWC 300 AWCTRPGPAG GKAAEHLAHA HLRRDSGSVR PLEHDVALAH LVATASQSSV FLSLCPLAAR 360 ANPSTNPANP SAHARARIKR PHARAPCPNQ LSEEEGSASA QLVANFHLSS PSPPPSSLPP 420 PFLPRANQNF SDLKSVITKM THTFPLVLAL LLLLLLASAC TNVHATASFV EEQSVAGIRG 480 AIGSRPPSCE GRCRSCGHCE AVQVPISPQK LQKQKRKKLG HGTRAAAVRG ATAVAGGGGG 540 SRAVRNSYDD HSNYKPLSWR CKCGRHILEP

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MFEADDRSCE PGGGGSSEEG EQETDGLPET SDEDKELKNC LLNKYSGYLS SLWRELSRKK  60
KKGKLPRDAR QKLLHWWQLH YRWPYPSVRV RSSFMPPPLG LMAWCELEKA ALAESTGLDG  120
KQINNWFINQ RKRHWKPAPP PMLARADYRL NPHSGGASSS SAHHAALRGE GQYFGGGSSY  180
PRGPAPRTPE RDALHRRVSV HHLQPPGSSS SAHVQTCSFA VDRSTSVSVN HLVPGEQPVE  240
AALHGGGEVV GGERLHYTHC CTKFSTHGSV QYHLGSFPNT AQLKCLAKKS TKSYRCPCWC  300
AWCTRPGPAG GKAAEHLAHA HLRRDSGSVR PLEHDVALAH LVATASQSSV FLSLCPLAAR  360
ANPSTNPANP SAHARARIKR PHARAPCPNQ LSEEEGSASA QLVANFHLSS PSPPPSSLPP  420
PFLPRANQNF SDLKSVITKM THTFPLVLAL LLLLLLASAC TNVHATASFV EEQSVAGIRG  480
AIGSRPPSCE GRCRSCGHCE AVQVPISPQK LQKQKRKKLG HGTRAAAVRG ATAVAGGGGG  540
SRAVRNSYDD HSNYKPLSWR CKCGRHILEP