PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01083.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 189aa MW: 20654.8 Da PI: 5.9416

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01083.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.6	6.5e-11	45	90	2	42
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLter 42 r+R+++t+ ql++Le+ F + n +ps+ +++e+A++l +++e+ Zmw_sc01083.1.g00110.1.sm.mk 45 RQRWQPTPMQLQILENIFDQgNGTPSKPKIKEIAAELshhgQISET 90 89***************99**************777777766 PP
2	Wus_type_Homeobox	60.3	4.2e-20	44	91	2	49
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49 +r+RW Ptp Q++iLe+++++G tP+k +i++i+aeL+++G+i+++N Zmw_sc01083.1.g00110.1.sm.mk 44 TRQRWQPTPMQLQILENIFDQGNGTPSKPKIKEIAAELSHHGQISETN 91 689*******************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.7E-7	39	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-7	44	85	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-8	45	90	IPR001356	Homeobox domain
CDD	cd00086	3.60E-5	45	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MECGGRGRAS GTATAVEENA GGGEPLGDLY CDPLVVPGRH KISTRQRWQP TPMQLQILEN 60 IFDQGNGTPS KPKIKEIAAE LSHHGQISET NTARSKRKQA ASLPNNAESE AEADEESLTD 120 KKPKSDRPFL HNTDRISEMH HFKTEQNQMG DMIYGSSDNL RSSGNPGQMS VYDNIVSNPS 180 TFAGLYLVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456540.1	8e-81	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	3e-62	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1E5V6G7	2e-80	A0A1E5V6G7_9POAL; WUSCHEL-related homeobox 8
STRING	Sb03g038080.1	3e-80	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]