PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01122.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 305aa    MW: 33531.8 Da    PI: 9.1085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01122.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.5e-33612021128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                   lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+t
  Zmw_sc01122.1.g00030.1.sm.mk  61 LPAGVKFDPTDQELL-EHLEGKARPESrklhplV---DefipTIEGEdGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTT 136
                                   799************.99****999985665442...133334666646**********.555666688************ PP

                           NAM  71 gkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   g+rk+r+++       + +W++tgk+++vl+ +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zmw_sc01122.1.g00030.1.sm.mk 137 GTRKRRKVHsededggETRWHKTGKTRPVLA-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 202
                                   ******8444555544778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-3852221IPR003441NAC domain
PROSITE profilePS5100532.84861221IPR003441NAC domain
PfamPF023656.0E-1562202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTWCNGFNDV RAAVDNPAGV VAAAGKKGAA SLAVLVKMCP SCGHRAQFAQ ETTTIQDLPG  60
LPAGVKFDPT DQELLEHLEG KARPESRKLH PLVDEFIPTI EGEDGICYTH PEKLPGVSKD  120
GLVRHFFHRP SKAYTTGTRK RRKVHSEDED GGETRWHKTG KTRPVLANGR PRGYKKILVL  180
YTNYGKQRKP EKTNWVMHQY HLGSDEEERD GELVVSKVFF QTQPRQCGST AAAKDPIGDA  240
TKNNPAVNGR ELAGHTVFSE PNVAEYYNPA TIGYGHGVPN NRAQVVATHF MPNFAVHAGR  300
ASFAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-116120215140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440245.11e-157NAC domain-containing protein 73
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A109PNR31e-168A0A109PNR3_BAMEM; NAC1
STRINGPavir.J04559.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]