PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01131.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 454aa    MW: 48974.6 Da    PI: 6.2521
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01131.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.7e-28109158150
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                   krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  Zmw_sc01131.1.g00010.1.am.mk 109 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 158
                                   79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.324101161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-37101160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-29102180IPR002100Transcription factor, MADS-box
CDDcd002651.74E-36102175No hitNo description
PRINTSPR004045.6E-25103123IPR002100Transcription factor, MADS-box
PROSITE patternPS003500103157IPR002100Transcription factor, MADS-box
PfamPF003191.2E-25110157IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-25123138IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-25138159IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
TTRARHFIRA RRGAVGVLIA SPGRKRVHDV VSIFSPPFPP LGPLRPVRCG SRTWWPRSFP  60
SDPGRASASP SDAPSLSPPC RVVHRRVGRR MCSRSSPIDA MGRVKLPIKR IENNTNRQVT  120
FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGR HGVEDVVLRY MNLSEHDRGD  180
MLQRLKREGD VATQLAKSVY ELFEPADLAT LGSTSEIDGC EKFQTEVLAR VVERKNYLLS  240
SHMAPFDATA TGVKDAAQMF VKPAEQVEGM AAFAGDVALW AADEGSSPGH QMFGSSDPMI  300
YLRYVPLMST TSIADQGMYD APSQVAGLLG EPGAGGEADA DAWREEYTCT ELLSTLIPAT  360
PFPLMQVSID RPFGSVASGG GTTEHCLALG PDDQFLPMDE AMPMAVATQE QVEASASCSY  420
VPRDETGGTP PVMAYDSTVA PEANVAGGSG TDLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-19101189192Myocyte-specific enhancer factor 2B
1tqe_Q3e-19101189192Myocyte-specific enhancer factor 2B
1tqe_R3e-19101189192Myocyte-specific enhancer factor 2B
1tqe_S3e-19101189192Myocyte-specific enhancer factor 2B
6c9l_A3e-19101189192Myocyte-specific enhancer factor 2B
6c9l_B3e-19101189192Myocyte-specific enhancer factor 2B
6c9l_C3e-19101189192Myocyte-specific enhancer factor 2B
6c9l_D3e-19101189192Myocyte-specific enhancer factor 2B
6c9l_E3e-19101189192Myocyte-specific enhancer factor 2B
6c9l_F3e-19101189192Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883256.11e-125agamous-like MADS-box protein AGL66
TrEMBLA0A3S6KAG01e-135A0A3S6KAG0_BAMML; MADS62
STRINGLPERR08G16000.11e-129(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360