PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01156.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 379aa MW: 40640.5 Da PI: 8.4708

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01156.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.6e-13	309	354	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq Zmw_sc01156.1.g00110.1.sm.mkhc 309 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 354 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.945	303	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-16	306	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.34E-13	307	358	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-15	308	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-10	309	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-13	309	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STTLGELCED FLPTGPRAGS PDAGTDNVFS 60 RFLADHQIRD KPPAPPVPAA AHFPNEAAMA SQQQQMMFHS QQQQQQQMSA VESGLYRTVS 120 SGMEGANAAG AGVSNLIRQS SSPAGFLNHL SMDNGYTNML RAGVGVGFRN DSSAAAADSP 180 AAGAGGSRLK GQLSFSSRQG SLMSQISEME SEELGGSSPE GAGGGRGFIP GYPMGSSGWE 240 DSSSLMTDNM SRMKRPRESS EPGQNGLAHQ FSLPKTSSEM AVIEKFLQFQ DAVPCKIRAK 300 RGCATHPRSI AERVRRTKIS ERIRKLQELV PNMDKQTNTS DMLDLAVDYI KDLQKQVKVL 360 NESRANCTCA ASKHQQYSG

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STTLGELCED FLPTGPRAGS PDAGTDNVFS  60
RFLADHQIRD KPPAPPVPAA AHFPNEAAMA SQQQQMMFHS QQQQQQQMSA VESGLYRTVS  120
SGMEGANAAG AGVSNLIRQS SSPAGFLNHL SMDNGYTNML RAGVGVGFRN DSSAAAADSP  180
AAGAGGSRLK GQLSFSSRQG SLMSQISEME SEELGGSSPE GAGGGRGFIP GYPMGSSGWE  240
DSSSLMTDNM SRMKRPRESS EPGQNGLAHQ FSLPKTSSEM AVIEKFLQFQ DAVPCKIRAK  300
RGCATHPRSI AERVRRTKIS ERIRKLQELV PNMDKQTNTS DMLDLAVDYI KDLQKQVKVL  360
NESRANCTCA ASKHQQYSG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804212.1	0.0	transcription factor bHLH130-like
Refseq	XP_025804213.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A2S3H345	0.0	A0A2S3H345_9POAL; Uncharacterized protein
STRING	Pavir.Ba00676.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103