PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01162.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 394aa MW: 43162.6 Da PI: 10.3759

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01162.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.4	1.2e-43	210	309	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ Zmw_sc01162.1.g00020.1.am.mk 210 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNISKMLQELPVQQRGDAVSSLVYEANARVRDPVYGCVGAIS 290 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq+q++ql+ +la++++e Zmw_sc01162.1.g00020.1.am.mk 291 FLQNQVSQLQMQLAVAQAE 309 ************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.483	209	310	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-43	210	307	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MCPDLPVLLG RALARVKHAY YMGTVDCRRR HASILSCPVI ITLPQIVITR ATDKLSARGR 60 EGGGLHEQYN ASIDRRTDTA RIFLRSVDRR SATGRGGGLH TYCGLQWSAL MFVPSKIQHG 120 TLQLADRVRS IDRRTRVNRS SRASHAAHAG MRRRLKSDRG LIGLSWTLSR FPRLVNGDFP 180 IDASLRGYIS GTWPPAVEKS NEQRMAGGSP CASCKLLRRR CTKDCIFAPF FPADDPHKFA 240 IVHKVFGASN ISKMLQELPV QQRGDAVSSL VYEANARVRD PVYGCVGAIS FLQNQVSQLQ 300 MQLAVAQAEI LCIQMQRRDD DGHHGSDGAA AAGVPPALVA AGDHHHVIPS QHQATPSMMA 360 PVDVDAFLMH NVGGVPPQMM AGAGEKLKRE SLWT

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MCPDLPVLLG RALARVKHAY YMGTVDCRRR HASILSCPVI ITLPQIVITR ATDKLSARGR  60
EGGGLHEQYN ASIDRRTDTA RIFLRSVDRR SATGRGGGLH TYCGLQWSAL MFVPSKIQHG  120
TLQLADRVRS IDRRTRVNRS SRASHAAHAG MRRRLKSDRG LIGLSWTLSR FPRLVNGDFP  180
IDASLRGYIS GTWPPAVEKS NEQRMAGGSP CASCKLLRRR CTKDCIFAPF FPADDPHKFA  240
IVHKVFGASN ISKMLQELPV QQRGDAVSSL VYEANARVRD PVYGCVGAIS FLQNQVSQLQ  300
MQLAVAQAEI LCIQMQRRDD DGHHGSDGAA AAGVPPALVA AGDHHHVIPS QHQATPSMMA  360
PVDVDAFLMH NVGGVPPQMM AGAGEKLKRE SLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	206	311	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	206	311	7	112	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150