PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01171.1.g00230.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 512aa    MW: 54658.7 Da    PI: 7.0717
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01171.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP103.71.4e-32209297178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS...........EEETTT--SS--S-STTTT--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr...........fhelsefDeekrsCrrrLakhn 70 
                                   +Cq+egC+adl++ak+yhrrhkvCe h+ka++v++ g++qrfCqqCsr           fh l efDe+krsCr+rL +hn
  Zmw_sc01171.1.g00230.1.am.mk 209 RCQAEGCKADLTTAKHYHRRHKVCEYHAKAAAVAAGGKQQRFCQQCSRyvhacrsatdkFHVLAEFDESKRSCRKRLTEHN 289
                                   6*********************************************97555555666669********************* PP

                                   ----S--- CS
                           SBP  71 errrkkqa 78 
                                   +rrrk+++
  Zmw_sc01171.1.g00230.1.am.mk 290 RRRRKPAS 297
                                   *****875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-30202282IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.419207295IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-30208298IPR004333Transcription factor, SBP-box
PfamPF031101.1E-23210294IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MTSNRLMSST AMSPVTTDVD FAFAPIQPPY LGFFDAGNMP MPSLERPLLG LGHQQHNNHY  60
DDFDCAASFP FQDSSFLLPP TTSLPPAPPL LTMDMAIAPT SPSSMHQMTL PCVPAAELYH  120
PAFGVGSSPF LKREDGPVVD AGGGKIGLNL GRRTYFSTAD VLAVDRLLLT RSRLGGGGGV  180
GAGLGLGLGM AGVLGLGLSA PHHHQQPPRC QAEGCKADLT TAKHYHRRHK VCEYHAKAAA  240
VAAGGKQQRF CQQCSRYVHA CRSATDKFHV LAEFDESKRS CRKRLTEHNR RRRKPASEQG  300
DKEDSSRPPK RADTISYSRD HKSASPAAAK STASSPNGSG VSCLDMDNNG QMMISSAAAA  360
APTALSLSAL PLGKDGDLDT MLMMRQVHGR RDDEGDEEQQ RFVTSLVLQA QQHHHNGGVG  420
NVLSTLSCSP VPDQHQNGDC NGFFETHQIP YLCPVALLSG DEISSPAINL VSYFAPLYGE  480
QCPAPLDCNP PFPCAASCPV SSFPCAASGP EI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-242102941184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277294KRSCRKRLTEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451645.21e-132squamosa promoter-binding-like protein 5
SwissprotQ0E3F81e-53SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLA0A1Z5RL611e-129A0A1Z5RL61_SORBI; Uncharacterized protein
STRINGSb04g005180.11e-130(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593