PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01180.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 144aa MW: 15146.1 Da PI: 9.6976

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01180.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	75.3	1e-23	73	121	2	50
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 C vegC+adls+ +eyh rhkvCe+hsk+pvv+v+g++qrfCqqCsr+ Zmw_sc01180.1.g00250.1.sm.mk 73 CSVEGCTADLSKGREYHLRHKVCEAHSKTPVVVVAGQQQRFCQQCSRYA 121 ***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.9E-24	65	120	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	17.495	70	144	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.36E-23	71	121	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.1E-18	73	120	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MDWDTKMPSW DLGTVVGPSS GGGGGALDLK LGGPTSWKSA ATAAAVPPPP PSSSSAPAKR 60 PRSGQAHQAV PACSVEGCTA DLSKGREYHL RHKVCEAHSK TPVVVVAGQQ QRFCQQCSRY 120 ARAHARSLIA ANMHYSWIPF PSTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	5e-16	72	120	5	53	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178580.1	1e-44	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	9e-42	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	A0A3S6H659	3e-54	A0A3S6H659_9POAL; Squamosa-promoter binding protein-like protein
STRING	Pavir.Ea03909.1.p	5e-48	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]