PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01184.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 193aa MW: 20795.8 Da PI: 8.5962

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01184.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	65	1.1e-20	111	155	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC r +++++k+C+ H+hrgr+r + ++e Zmw_sc01184.1.g00010.1.am.mkhc 111 EPEPGRCRRTDGKKWRCCRSTIPNEKYCQGHMHRGRKRPVQLVVE 155 69************************************9998875 PP
2	QLQ	45.8	1.8e-16	46	80	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F a+Qlq+L++Q +y y+aa++PvP +L+++i+k Zmw_sc01184.1.g00010.1.am.mkhc 46 FAAMQLQELEQQSRVYHYMAARVPVPTHLVFPIWK 80 889******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.5E-4	44	80	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.502	45	80	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.0E-10	46	79	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	20.829	111	155	IPR014977	WRC domain
Pfam	PF08879	2.5E-18	112	150	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MCPVALGTQG ISGVLAWFRS VAAAAALQEE MKALIASIPD GAGAVFAAMQ LQELEQQSRV 60 YHYMAARVPV PTHLVFPIWK SVTGASSEGA QKYPTLMGLA TLCLDFGKDP EPEPGRCRRT 120 DGKKWRCCRS TIPNEKYCQG HMHRGRKRPV QLVVEDDEPD SAPGSETTPG KADDKNASNK 180 KLTVAAPTAV KSS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800926.1	1e-108	growth-regulating factor 11-like
Swissprot	A5HEG9	1e-103	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	A0A2S3H2A3	1e-107	A0A2S3H2A3_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EVY2	1e-107	A0A2T7EVY2_9POAL; Uncharacterized protein
TrEMBL	A0A3L6QSN3	1e-107	A0A3L6QSN3_PANMI; Growth-regulating factor 11-like
TrEMBL	A0A3L6T504	1e-107	A0A3L6T504_PANMI; Growth-regulating factor 11-like
STRING	Pavir.Bb02610.1.p	1e-110	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]