PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01186.1.g00310.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 187aa    MW: 21059 Da    PI: 10.3184
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01186.1.g00310.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-1873120148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Zmw_sc01186.1.g00310.1.am.mk  73 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 120
                                   79******************************99************97 PP
2Myb_DNA-binding56.66e-18126170147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T+++del+++++++lG++ W++Ia  ++ gRt++++k++w+++
  Zmw_sc01186.1.g00310.1.am.mk 126 RGNFTEDDDELIIKLHAMLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 170
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2464123IPR009057Homeodomain-like
PROSITE profilePS5129417.24368120IPR017930Myb domain
SuperFamilySSF466896.47E-3072167IPR009057Homeodomain-like
SMARTSM007174.1E-1472122IPR001005SANT/Myb domain
PfamPF002495.8E-1673120IPR001005SANT/Myb domain
CDDcd001673.04E-1175120No hitNo description
PROSITE profilePS5129428.047121175IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-27124175IPR009057Homeodomain-like
SMARTSM007171.5E-16125173IPR001005SANT/Myb domain
PfamPF002493.5E-16126170IPR001005SANT/Myb domain
CDDcd001677.41E-12128171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
LAYEPSVTPA LPGLGKYTEE SRSSRARARS NALPVGSASR QSVLGRSSEE SLRRYAGEAM  60
GRSPCCEKAH TNKGAWTKEE DQRLIAYIKA HGEGCWRSLP KAAGLLRCGK SCRLRWMNYL  120
RPDLKRGNFT EDDDELIIKL HAMLGNKWSL IAGQLPGRTD NEIKNYWNTH IKRKLLSRGI  180
DPQTHRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30731757108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627699.11e-92myb-related protein 308
SwissprotQ9SZP18e-87MYB4_ARATH; Transcription repressor MYB4
TrEMBLA2WXH62e-91A2WXH6_ORYSI; Uncharacterized protein
TrEMBLI1NTU82e-91I1NTU8_ORYGL; Uncharacterized protein
TrEMBLQ8RUI92e-91Q8RUI9_ORYSJ; Os01g0874300 protein
STRINGOS01T0874300-014e-92(Oryza sativa)
STRINGORGLA01G0328800.14e-92(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]