PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01192.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 433aa    MW: 47888 Da    PI: 4.6878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01192.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391e-121462149
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  k++en++ r+ t+ kRr g+ K    LS+L++a++av++ +++gk+  +
  Zmw_sc01192.1.g00180.1.sm.mk 14 KFVENDRDRSLTYFKRRSGLYKSITDLSTLTGAKAAVVVEGESGKISSF 62
                                  789******************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-10565IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.315666IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-8828IPR002100Transcription factor, MADS-box
CDDcd002662.07E-16879No hitNo description
SuperFamilySSF554552.35E-161180IPR002100Transcription factor, MADS-box
PfamPF003191.6E-141662IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-82843IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-84364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MATAIRRPRR SGIKFVENDR DRSLTYFKRR SGLYKSITDL STLTGAKAAV VVEGESGKIS  60
SFGSPSANAV VECFLSNSSP ANIYVDEAEM ARITYLQDEL FHVEKEKTME EKRVKESKAR  120
VKKIEETSRV GKLLFQDVEK LGAEELSELL QHLARVQEDI DARVYADQQV EVSGQQGDPS  180
VPAFSSSSWL PQINTPPRHL PWAPLHAPSS LHPQSPWGPF LHSSMSYSSL LPPAHIPPPA  240
HTPAIHHQAP IMPPPPTSEA HQYGYYFSQE QPLPQADLDP TYAYAPNVNY FDPVVPLDQN  300
PSAYIQNFNF NPVPPLDQNP AAYARNFYFD PVLPPQTNQQ AISQNFAADG QPPDVQWTPT  360
SPGNEYYNYQ TLYVQMGLTD DNGVQAAAAG GDQEHVPDPS DGLHQEDDDG SLTMNLWDYS  420
PFRGENPGGG AGN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276