PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01200.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 255aa MW: 26738.2 Da PI: 6.5103

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01200.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.5e-07	127	152	5	30
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 h+++Er RR+ri +++ L+el+P+ Zmw_sc01200.1.g00060.1.sm.mkhc 127 HSIAERLRRERIAERIRALQELVPNT 152 99**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-7	120	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.207	122	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-7	124	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	127	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAGQQPPGGS EDDFLEHLFT FPTAGAGGHA GAGGGGGGDH PFPLALSLDA AAEASGAAKP 60 DRDPVQLAGL FPPVFAGAGG MQQTNLCPPP PHQVFHAQPK PGEGAMAQPP APRPKVRARR 120 GQATDPHSIA ERLRRERIAE RIRALQELVP NTNKVLSMSR LGGAGAVAQL VADIPLSVKG 180 EASDGGSTQH IWEKWSTDGT EKQVAKLMEE DIGAAMQFLQ SKALCMMPIS LAMAIYDTQH 240 PQEHHPLKPE PNSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461549.1	1e-135	transcription factor UNE12
Refseq	XP_025804227.1	1e-135	transcription factor UNE12
Swissprot	O22768	3e-56	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A1W0W2G1	1e-134	A0A1W0W2G1_SORBI; Uncharacterized protein
TrEMBL	A0A2S3GW17	1e-134	A0A2S3GW17_9POAL; Uncharacterized protein
STRING	Sb02g004570.1	1e-135	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2656	35	80

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]