PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01200.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 217aa    MW: 23752.5 Da    PI: 8.4916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01200.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-0982126554
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y++ L
  Zmw_sc01200.1.g00100.1.sm.mk  82 HSIAERLRRERIAEWIRALQELVPNT-----NKTDRAAMLDEILDYVNFL 126
                                   99***********************6.....59*************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-1575136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.22E-1075131No hitNo description
PROSITE profilePS5088815.09177126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1479137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-682126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1083132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSCSLTVFGG GLMQDRYPVQ LAGLFPPVFS GAGGMQQTNL CPPPPHQVFH AQPKPGEGAM  60
AQQPPAPRPK VRARRGQATD PHSIAERLRR ERIAEWIRAL QELVPNTNKT DRAAMLDEIL  120
DYVNFLRLQV KVLSMSRLGG AGAVAQLVAD IPLSVKGEAS DGGSTQHIWE KWSTDGTEKL  180
VAKLMEEDIG AAMQFFQSKA LRMMPISLAM VIYDTQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461549.11e-125transcription factor UNE12
RefseqXP_004955662.11e-125transcription factor UNE12
SwissprotO227681e-69UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1W0W2G11e-124A0A1W0W2G1_SORBI; Uncharacterized protein
TrEMBLK3ZVS31e-124K3ZVS3_SETIT; Uncharacterized protein
STRINGSi030704m1e-125(Setaria italica)
STRINGSb02g004570.11e-125(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]