PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01212.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 377aa MW: 39603.9 Da PI: 10.6024

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01212.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.5	4e-35	140	200	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ al+cprC++t+tkfCyynny++ qPry+CkaC+ryWt+GG+ rn+PvGg++rk++k+s Zmw_sc01212.1.g00120.1.am.mk 140 PDVALACPRCNATETKFCYYNNYNMLQPRYLCKACKRYWTHGGSQRNIPVGGASRKQNKRS 200 567899**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-22	136	199	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-30	143	198	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.841	144	198	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	146	182	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MEADVICTSI MLGDMWGPAS RGPTYQRPFF TLFPRTARAV LSPFSSLSSR LAASNIKRKG 60 ALSPSVALSI PILLQSSSDE IKGTLVPEKM RNSRNSKTSA GASSAHGNNN QQEARNMRQA 120 RAARQQAAAN VGERRARPQP DVALACPRCN ATETKFCYYN NYNMLQPRYL CKACKRYWTH 180 GGSQRNIPVG GASRKQNKRS SASSSLPAAA ASSSSVINKE LQQQLLPAAP MIEAAADFSN 240 VFPSFMPTGF EHHSNQLPFS PAPAPLPLPT LLPPVPMLAS DAGTPSFLDM LRGGFLDYQT 300 NGFYAPATAS SGMEAPPPLP FGPAVQPGVA GILQGGGAAP TGGRVDATAA GQGAAWPKPQ 360 VRGNQQGGAG APGNGRA

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MEADVICTSI MLGDMWGPAS RGPTYQRPFF TLFPRTARAV LSPFSSLSSR LAASNIKRKG  60
ALSPSVALSI PILLQSSSDE IKGTLVPEKM RNSRNSKTSA GASSAHGNNN QQEARNMRQA  120
RAARQQAAAN VGERRARPQP DVALACPRCN ATETKFCYYN NYNMLQPRYL CKACKRYWTH  180
GGSQRNIPVG GASRKQNKRS SASSSLPAAA ASSSSVINKE LQQQLLPAAP MIEAAADFSN  240
VFPSFMPTGF EHHSNQLPFS PAPAPLPLPT LLPPVPMLAS DAGTPSFLDM LRGGFLDYQT  300
NGFYAPATAS SGMEAPPPLP FGPAVQPGVA GILQGGGAAP TGGRVDATAA GQGAAWPKPQ  360
VRGNQQGGAG APGNGRA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980592.1	4e-47	dof zinc finger protein PBF
STRING	Si026678m	4e-46	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22474	3	7