PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01224.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 682aa MW: 72965.9 Da PI: 10.1765

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01224.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.3	1.1e-42	502	601	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA ar+rdPvyG++g i+ Zmw_sc01224.1.g00060.1.am.mk 502 PCAACKILRRRCVDRCVLAPYFPPTDPRKFATAHRVFGASNIIKLLQELPEEHRADAVSSMVYEASARIRDPVYGCAGAIW 582 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+q++ lka+la++++e Zmw_sc01224.1.g00060.1.am.mk 583 QLQKQVNDLKAQLARAHAE 601 ************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.728	501	602	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-42	502	599	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MPNWTGPVGR LITGKDPADR HQRPAIGGTT IQARHSALHG AVPLVILQIA SRSFPPFRRL 60 RLIVPFVEEK KSEKNLSRRR VTNHAYGPVA PDHHERYSFV FSLSVAWPAL LALKETIGGD 120 RLRDKIVRCQ DENSSSDGSM KRSGSLRGTV QIANIDGRAR EASTAAPAII LWAAGASRGR 180 AEAGGPGVRR PERATAAGSG SAGGAGRVGV RKKRELEHAL ARKSTGARKK RELEHALTRK 240 STVAAAYGIL TLGDGNDRGN RAELNMATGS PELDHEGQTA RANSVYWSSW RDGPVLEGAC 300 GICSPDDGKG VPDMLQEAVP DALQDQHRQP VSTPAARRSS RARIRSSRIS GEEWALILLL 360 CFLLALALFF TSSRSARENS SSIICFRVRA EPNQPIGGVR LGSTWASQSA FQPASRFPFR 420 SSEFLLHCRY SSMAPPRRAS PPSALQVKSK AQQATHMDLV SHAPTTMDES SACTVVATPP 480 PQHGPSTPPA SPQPAAAVVL SPCAACKILR RRCVDRCVLA PYFPPTDPRK FATAHRVFGA 540 SNIIKLLQEL PEEHRADAVS SMVYEASARI RDPVYGCAGA IWQLQKQVND LKAQLARAHA 600 EFAVARAQHA HLLALVCMEV AAASSSPAPY CAVDYSSHLA AAVAPAAAQA AADALYVVDG 660 AGAGGLQLHA SAVSWGDESL WT

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MPNWTGPVGR LITGKDPADR HQRPAIGGTT IQARHSALHG AVPLVILQIA SRSFPPFRRL  60
RLIVPFVEEK KSEKNLSRRR VTNHAYGPVA PDHHERYSFV FSLSVAWPAL LALKETIGGD  120
RLRDKIVRCQ DENSSSDGSM KRSGSLRGTV QIANIDGRAR EASTAAPAII LWAAGASRGR  180
AEAGGPGVRR PERATAAGSG SAGGAGRVGV RKKRELEHAL ARKSTGARKK RELEHALTRK  240
STVAAAYGIL TLGDGNDRGN RAELNMATGS PELDHEGQTA RANSVYWSSW RDGPVLEGAC  300
GICSPDDGKG VPDMLQEAVP DALQDQHRQP VSTPAARRSS RARIRSSRIS GEEWALILLL  360
CFLLALALFF TSSRSARENS SSIICFRVRA EPNQPIGGVR LGSTWASQSA FQPASRFPFR  420
SSEFLLHCRY SSMAPPRRAS PPSALQVKSK AQQATHMDLV SHAPTTMDES SACTVVATPP  480
PQHGPSTPPA SPQPAAAVVL SPCAACKILR RRCVDRCVLA PYFPPTDPRK FATAHRVFGA  540
SNIIKLLQEL PEEHRADAVS SMVYEASARI RDPVYGCAGA IWQLQKQVND LKAQLARAHA  600
EFAVARAQHA HLLALVCMEV AAASSSPAPY CAVDYSSHLA AAVAPAAAQA AADALYVVDG  660
AGAGGLQLHA SAVSWGDESL WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-39	501	602	10	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-39	501	602	10	111	LOB family transfactor Ramosa2.1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	230	KKRELEHALARKSTGARKKR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90