PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01228.1.g00240.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 304aa MW: 33263.2 Da PI: 9.3766

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01228.1.g00240.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	9.1e-15	144	188	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ +qlG+g+W+ I++ + +Rt+ q+ s+ qky Zmw_sc01228.1.g00240.1.sm.mkhc 144 PWTEEEHRKFLDGLRQLGKGDWRGISKNFIATRTATQVASHAQKY 188 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.667	137	193	IPR017930	Myb domain
SuperFamily	SSF46689	1.36E-17	138	193	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-18	140	192	IPR006447	Myb domain, plants
SMART	SM00717	2.8E-11	141	191	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-11	141	187	IPR009057	Homeodomain-like
CDD	cd00167	1.78E-10	144	189	No hit	No description
Pfam	PF00249	2.2E-12	144	188	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MIPSPTRIPQ SSLQSIRPNQ PSNPLPTRLP PTATAQQTPG EGMEPRRLDE EQEGRKQAAP 60 VSFRLFGMDV RVAGEDGVDV EEDDGGPMEI KKSSSMPNLT SINPLRPLPG EEVGKGYASD 120 DGDLASPQQK RRRRKTQERK KGVPWTEEEH RKFLDGLRQL GKGDWRGISK NFIATRTATQ 180 VASHAQKYFL RQTNPGKKKR RASLFDVGMS DYNNDQVPSS QSIATQPAPT EEIIHTDRGD 240 VPVNEPTNFF KGSKAHAETS FASMASGPET ASSSISSLEL NIAVNSLDLS IAPPRGTPEA 300 IKVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	134	KRRRRK
2	129	140	KRRRRKTQERKK
3	130	140	RRRRKTQERKK
4	196	200	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983632.1	1e-108	transcription factor MYBS2
Swissprot	B8BI93	3e-80	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	3e-80	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A0A9KKT0	1e-123	A0A0A9KKT0_ARUDO; Uncharacterized protein
STRING	Si036966m	1e-107	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]