PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01251.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 193aa MW: 20664.6 Da PI: 7.8275

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01251.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.9e-05	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +Cg++F r +L H r H Zmw_sc01251.1.g00130.1.sm.mk 9 HKCDICGRVFARGVQLGGHKRAH 31 79**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.28E-6	5	36	No hit	No description
PROSITE profile	PS50157	12.487	9	36	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.4E-9	9	33	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.2E-5	9	35	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MQLMQEQGHK CDICGRVFAR GVQLGGHKRA HYGKKIEYKK RKKQCVEPPP QLLDPPAPLA 60 APATAVCMAD LTRSMDMQTG QPSHSSPPPQ VVAPPAPLAS SAAVCMVDPT GNQTEQPSDS 120 SPQPAVTILR LFGTNIMPGA PAVQEGNGIM PQAEAPEEGS GATEDLPSTR RQSLNIYHAY 180 GFCLRKVQIT QDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	42	KKRKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33219	3	4