PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01251.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 405aa MW: 42935.4 Da PI: 8.8203

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01251.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.6	8.7e-43	189	287	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC++dCv+apyfp ++++kf vh++FGasnv+kll++l+e +reda++sl+yeA++r+rdPvyG+vgvi+ Zmw_sc01251.1.g00160.1.am.mk 189 PCAACKFLRRKCQPDCVFAPYFPPDNTQKFVHVHRVFGASNVTKLLNELQEFQREDAVNSLAYEADMRLRDPVYGCVGVIS 269 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 lq++l+ql++ela++k Zmw_sc01251.1.g00160.1.am.mk 270 VLQHNLRQLQQELARAKY 287 ***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	188	289	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-43	189	286	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MGGKISCKLT CHDEGRRCVN GGHQGIQWRG SALPPSRRRG TPTDQSCIIS SSSCFERVHS 60 ICTAGSYSRM CFALVGSTHL DGCWPTFCLP CMGKQQQQQP PPVRSGRREA RRARRRDESG 120 GSRGVGKAEI AEEIIIIIII IQKKGREPDR SQMASSSASS MPTPSGSLIT VGASSTSAAA 180 AAVCGTGSPC AACKFLRRKC QPDCVFAPYF PPDNTQKFVH VHRVFGASNV TKLLNELQEF 240 QREDAVNSLA YEADMRLRDP VYGCVGVISV LQHNLRQLQQ ELARAKYELS KYQQAGAAAA 300 AANASTGPNG PQPMAEFIGN GMPNGGHNFI NIGHSPALGS IGVFGQDHFA NAQMLSRNYD 360 GGYEFGYPAT MGGNGGPASS LGSLGVNSFL KSGTAGGDDK PSAGQ

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MGGKISCKLT CHDEGRRCVN GGHQGIQWRG SALPPSRRRG TPTDQSCIIS SSSCFERVHS  60
ICTAGSYSRM CFALVGSTHL DGCWPTFCLP CMGKQQQQQP PPVRSGRREA RRARRRDESG  120
GSRGVGKAEI AEEIIIIIII IQKKGREPDR SQMASSSASS MPTPSGSLIT VGASSTSAAA  180
AAVCGTGSPC AACKFLRRKC QPDCVFAPYF PPDNTQKFVH VHRVFGASNV TKLLNELQEF  240
QREDAVNSLA YEADMRLRDP VYGCVGVISV LQHNLRQLQQ ELARAKYELS KYQQAGAAAA  300
AANASTGPNG PQPMAEFIGN GMPNGGHNFI NIGHSPALGS IGVFGQDHFA NAQMLSRNYD  360
GGYEFGYPAT MGGNGGPASS LGSLGVNSFL KSGTAGGDDK PSAGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	179	292	1	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	179	292	1	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970852.1	1e-134	LOB domain-containing protein 6
Swissprot	Q32SG3	1e-129	LBD6_MAIZE; LOB domain-containing protein 6
TrEMBL	K3XL26	1e-133	K3XL26_SETIT; Uncharacterized protein
STRING	Si002599m	1e-134	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95