PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01254.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 317aa MW: 34868.9 Da PI: 7.0144

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01254.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	181	221	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++YIk L Zmw_sc01254.1.g00170.1.am.mk 181 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 221 699***************87.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.555	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-15	177	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-15	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-13	178	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-7	182	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.20E-7	195	226	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDNITRNSSS SSSWDLDMSL GSHHHPLLFD SQQVSAAPPP PPLPFHISSS HHHHPPLHPT 60 HHHLHHPSMD PSQSSSLFSP PHHRLHHLGL DVDLSSHHRH QHEYGEQQEH HHEQAEELRQ 120 QEPVGQQDER AAEDVEEELG AMKEMMYRIA AMQPVDIDPA TIKKPRRRNV RISEDPQSVA 180 ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIRYIKF LKRQVQDLQH QPPPQQYPAA 240 AGAPAAGPSA SFVGLPGRPS GPFLPLGPGP LIDCAGLVRP VDVHGPTSSS SSSSMGGAHA 300 ALGFGFSSAG QSSQGMH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822758.1	1e-111	transcription factor HEC2-like
TrEMBL	A0A2T7D2I0	1e-117	A0A2T7D2I0_9POAL; Uncharacterized protein
STRING	Si015197m	1e-102	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9051	32	46